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Jeet Sukumaran
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DendroPy: a Python library for phylogenetic computing
J Sukumaran, MT Holder
Bioinformatics 26 (12), 1569-1571, 2010
16892010
Multispecies coalescent delimits structure, not species
J Sukumaran, LL Knowles
Proceedings of the National Academy of Sciences 114 (7), 1607-1612, 2017
7942017
Evolutionary and biogeographic origins of high tropical diversity in Old World frogs (Ranidae)
JJ Wiens, J Sukumaran, RA Pyron, RM Brown
Evolution 63 (5), 1217-1231, 2009
2382009
Open season: An analysis of the pet trade in Medan, Sumatra 1997-2001
CR Shepherd, J Sukumaran, SA Wich
< bound method Organization. get_name_with_acronym of< Organization …, 2004
1342004
NeXML: rich, extensible, and verifiable representation of comparative data and metadata
RA Vos, JP Balhoff, JA Caravas, MT Holder, H Lapp, WP Maddison, ...
Systematic biology 61 (4), 675-689, 2012
1112012
Phylogeography and historical demography of Polypedates leucomystax in the islands of Indonesia and the Philippines: Evidence for recent human-mediated range expansion?
RM Brown, CW Linkem, CD Siler, J Sukumaran, JA Esselstyn, ...
Molecular Phylogenetics and Evolution 57 (2), 598-619, 2010
1022010
A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics
MT Holder, J Sukumaran, PO Lewis
Systematic biology 57 (5), 814-821, 2008
972008
Dominant climate influences on North American bird distributions
A Jiménez‐Valverde, N Barve, A Lira‐Noriega, SP Maher, Y Nakazawa, ...
Global Ecology and Biogeography 20 (1), 114-118, 2011
922011
Evidence for climate-driven diversification? A caution for interpreting ABC inferences of simultaneous historical events
JR Oaks, J Sukumaran, JA Esselstyn, CW Linkem, CD Siler, MT Holder, ...
Evolution 67 (4), 991-1010, 2013
792013
Incorporating the speciation process into species delimitation
J Sukumaran, MT Holder, LL Knowles
PLoS Computational Biology 17 (5), e1008924, 2021
772021
Phylogenetic relationships of Ansonia from Southeast Asia inferred from mitochondrial DNA sequences: Systematic and biogeographic implications (Anura: Bufonidae)
M Matsui, A Tominaga, W Liu, W Khonsue, LL Grismer, AC Diesmos, ...
Molecular Phylogenetics and Evolution 54 (2), 561-570, 2010
632010
Neutral models of microbiome evolution
Q Zeng, J Sukumaran, S Wu, A Rodrigo
PLoS computational biology 11 (7), e1004365, 2015
602015
Models of microbiome evolution incorporating host and microbial selection
Q Zeng, S Wu, J Sukumaran, A Rodrigo
Microbiome 5, 1-16, 2017
562017
SumTrees: phylogenetic tree summarization. 4.0. 0
J Sukumaran, MT Holder
Progr. Doc. available from authors, 2015
552015
Machine learning biogeographic processes from biotic patterns: a new trait-dependent dispersal and diversification model with model choice by simulation-trained discriminant …
J Sukumaran, EP Economo, L Lacey Knowles
Systematic Biology 65 (3), 525-545, 2016
482016
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient
A Stoltzfus, H Lapp, N Matasci, H Deus, B Sidlauskas, CM Zmasek, ...
BMC bioinformatics 14, 1-17, 2013
482013
Trait-dependent biogeography:(re) integrating biology into probabilistic historical biogeographical models
J Sukumaran, LL Knowles
Trends in Ecology & Evolution 33 (6), 390-398, 2018
432018
Microevolutionary processes impact macroevolutionary patterns
J Li, JP Huang, J Sukumaran, LL Knowles
BMC evolutionary biology 18, 1-8, 2018
372018
A new species of Microhyla (Anura: Microhylidae) from the Malay Peninsula
I Das, N Yaakob, J Sukumaran
HAMADRYAD-MADRAS- 31 (2), 304, 2007
362007
A matter of phylogenetic scale: distinguishing incomplete lineage sorting from lateral gene transfer as the cause of gene tree discord in recent versus deep diversification …
LL Knowles, H Huang, J Sukumaran, SA Smith
American journal of botany 105 (3), 376-384, 2018
352018
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Articles 1–20