Ruben Sanchez-Garcia
Ruben Sanchez-Garcia
University of Oxford (UK), Department of Statistics & XChem
Verified email at
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DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
R Sanchez-Garcia, J Gomez-Blanco, A Cuervo, JM Carazo, COS Sorzano, ...
Communications Biology, 2021
BIPSPI: a method for the prediction of Partner-Specific Protein-Protein Interfaces
R Sanchez-Garcia, COS Sorzano, JM Carazo, J Segura
Bioinformatics, 2018
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy
COS Sorzano, A Jiménez, J Mota, JL Vilas, D Maluenda, M Martínez, ...
Acta Crystallographica Section F: Structural Biology Communications 75 (1 …, 2019
Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures
R Melero, COS Sorzano, B Foster, JL Vilas, M Martínez, R Marabini, ...
IUCrJ 7 (6), 1059-1069, 2020
Deep Consensus, a deep learning-based approach for particle pruning in cryo-electron microscopy
R Sanchez-Garcia, J Segura, D Maluenda, JM Carazo, COS Sorzano
IUCrJ 5 (6), 854-865, 2018
Local computational methods to improve the interpretability and analysis of cryo-EM maps
S Kaur, J Gomez-Blanco, AAZ Khalifa, S Adinarayanan, ...
Nature communications 12 (1), 1240, 2021
MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning
R Sanchez-Garcia, J Segura, D Maluenda, COS Sorzano, JM Carazo
Journal of structural biology 210 (3), 107498, 2020
Integration of Cryo-EM Model Building Software in Scipion
M Martínez, A Jiménez-Moreno, D Maluenda, E Ramírez-Aportela, ...
Journal of Chemical Information and Modeling 60 (5), 2533-2540, 2020
3DBIONOTES v2. 0: a web server for the automatic annotation of macromolecular structures
J Segura, R Sanchez-Garcia, M Martinez, J Cuenca-Alba, ...
Bioinformatics 33 (22), 3655-3657, 2017
3DIANA: 3D domain interaction analysis: a toolbox for quaternary structure modeling
J Segura, R Sanchez-Garcia, D Tabas-Madrid, J Cuenca-Alba, ...
Biophysical Journal 110 (4), 766-775, 2016
Algorithmic robustness to preferred orientations in single particle analysis by CryoEM
COS Sorzano, D Semchonok, SC Lin, YC Lo, JL Vilas, A Jiménez-Moreno, ...
Journal of Structural Biology 213 (1), 107695, 2021
Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion
D Maluenda, T Majtner, P Horváth, JL Vilas, A Jiménez-Moreno, J Mota, ...
Acta Crystallographica Section D: Structural Biology 75 (10), 882-894, 2019
3DBIONOTES v3. 0: crossing molecular and structural biology data with genomic variations
J Segura, R Sanchez-Garcia, COS Sorzano, JM Carazo
Bioinformatics 35 (18), 3512-3513, 2019
Swarm optimization as a consensus technique for Electron Microscopy Initial Volume
COS Sorzano, J Vargas, JL Vilas, A Jiménez-Moreno, J Mota, T Majtner, ...
Appl. Anal. Optim 2, 299-313, 2018
Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion
D Strelak, A Jiménez-Moreno, JL Vilas, E Ramírez-Aportela, ...
Molecules 26 (20), 6224, 2021
Image processing in Cryo-Electron Microscopy of Single Particles: the power of combining methods
COS Sorzano, A Jiménez-Moreno, D Maluenda, E Ramírez-Aportela, ...
Structural Proteomics: High-Throughput Methods, 257-289, 2021
3DBIONOTES: a unified, enriched and interactive view of macromolecular information
D Tabas-Madrid, J Segura, R Sanchez-Garcia, J Cuenca-Alba, ...
Journal of Structural Biology 194 (2), 231-234, 2016
On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy
COS Sorzano, A Jiménez-Moreno, D Maluenda, M Martinez, ...
Acta Crystallographica Section D: Structural Biology 78 (4), 2022
Validation of electron microscopy initial models via small angle X-ray scattering curves
A Jiménez, S Jonic, T Majtner, J Otón, JL Vilas, D Maluenda, J Mota, ...
Bioinformatics 35 (14), 2427-2433, 2019
Cryo-em and single-particle analysis with Scipion
A Jiménez-Moreno, L del Cano, M Martínez, E Ramírez-Aportela, ...
JoVE (Journal of Visualized Experiments), e62261, 2021
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