Rahul Sharma, PhD
Rahul Sharma, PhD
Head of Big Data & AI
Verified email at
Cited by
Cited by
The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
K Yoshida, VJ Schuenemann, LM Cano, M Pais, B Mishra, R Sharma, ...
Elife 2, e00731, 2013
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici
KH Lamour, J Mudge, D Gobena, OP Hurtado-Gonzales, J Schmutz, ...
Molecular Plant-Microbe Interactions 25 (10), 1350-1360, 2012
An Illumina metabarcoding pipeline for fungi
M Bálint, PA Schmidt, R Sharma, M Thines, I Schmitt
Ecology and evolution 4 (13), 2642-2653, 2014
Gene Loss Rather Than Gene Gain Is Associated with a Host Jump from Monocots to Dicots in the Smut Fungus Melanopsichium pennsylvanicum
R Sharma, B Mishra, F Runge, M Thines
Genome biology and evolution 6 (8), 2034-2049, 2014
The fungal core effector Pep1 is conserved across smuts of dicots and monocots
C Hemetsberger, AN Mueller, A Matei, C Herrberger, G Hensel, ...
New Phytologist 206 (3), 1116-1126, 2015
Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora
R Sharma, X Xia, LM Cano, E Evangelisti, E Kemen, H Judelson, S Oome, ...
BMC genomics 16 (1), 741, 2015
The genome of the basal agaricomycete Xanthophyllomyces dendrorhous provides insights into the organization of its acetyl-CoA derived pathways and the evolution of Agaricomycotina
R Sharma, S Gassel, S Steiger, X Xia, R Bauer, G Sandmann, M Thines
BMC genomics 16 (1), 233, 2015
The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer …
DK Gupta, M Rühl, B Mishra, V Kleofas, M Hofrichter, R Herzog, ...
BMC genomics 19 (1), 48, 2018
A reference genome of the European beech (Fagus sylvatica L.)
B Mishra, DK Gupta, M Pfenninger, T Hickler, E Langer, B Nam, J Paule, ...
GigaScience 7 (6), giy063, 2018
The inclusion of downy mildews in a multi-locus-dataset and its reanalysis reveals a high degree of paraphyly in Phytophthora
F Runge, S Telle, S Ploch, E Savory, B Day, R Sharma, M Thines
IMA fungus 2 (2), 163-171, 2011
Root-associated fungi of Arabidopsis thaliana and Microthlaspi perfoliatum
J Keim, B Mishra, R Sharma, S Ploch, M Thines
Fungal Diversity 66 (1), 99-111, 2014
Adaptive differentiation coincides with local bioclimatic conditions along an elevational cline in populations of a lichen-forming fungus
F Dal Grande, R Sharma, A Meiser, G Rolshausen, B Büdel, B Mishra, ...
BMC evolutionary biology 17 (1), 93, 2017
Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle
NJ Tobias, B Mishra, DK Gupta, R Sharma, M Thines, TP Stinear, ...
BMC genomics 17 (1), 537, 2016
Coincidence of virulence shifts and population genetic changes of Pseudoperonospora cubensis in the Czech Republic
M Kitner, A Lebeda, R Sharma, F Runge, P Dvořák, A Tahir, YJ Choi, ...
Plant Pathology 64 (6), 1461-1470, 2015
The Genome of Peronospora belbahrii Reveals High Heterozygosity, a Low Number of Canonical Effectors, and TC-Rich Promoters
M Thines, R Sharma, SYA Rodenburg, A Gogleva, HS Judelson, X Xia, ...
Molecular Plant-Microbe Interactions 33 (5), 742-753, 2020
Saprotrophic yeasts formerly classified as Pseudozyma have retained a large effector arsenal, including functional Pep1 orthologs
R Sharma, B Ökmen, G Doehlemann, M Thines
Mycological Progress 18 (5), 763-768, 2019
Differential distribution of a SINE element in the Entamoeba histolytica and Entamoeba dispar genomes: Role of the LINE-encoded endonuclease
V Kumari, R Sharma, VP Yadav, AK Gupta, A Bhattacharya, ...
BMC genomics 12 (1), 267, 2011
Inhibition of the HIF1α-Induced Cardiospecific HERNA1 eRNA Protects from Heart Disease
P Mirtschink, C Bischof, MD Pham, R Sharma, S Khadayate, G Rossi, ...
Circulation, 2019
Comparative genomics including the early-diverging smut fungus Ceraceosorus bombacis reveals signatures of parallel evolution within plant and animal pathogens of fungi and …
R Sharma, X Xia, K Riess, R Bauer, M Thines
Genome biology and evolution 7 (9), 2781-2798, 2015
Community barcoding reveals little effect of ocean acidification on the composition of coastal plankton communities: Evidence from a long-term mesocosm study in the Gullmar …
JAF Langer, R Sharma, SI Schmidt, S Bahrdt, HG Horn, M Algueró-Muńiz, ...
PloS one 12 (4), e0175808, 2017
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