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Evan Cofer
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Cited by
Year
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
19332018
Selene: a PyTorch-based deep learning library for sequence data
KM Chen, EM Cofer, J Zhou, OG Troyanskaya
Nature Methods 16 (4), 315, 2019
130*2019
Ten quick tips for deep learning in biology
BD Lee, A Gitter, CS Greene, S Raschka, F Maguire, AJ Titus, MD Kessler, ...
PLOS Computational Biology 18 (3), e1009803, 2022
252022
A systematic machine learning and data type comparison yields metagenomic predictors of infant age, sex, breastfeeding, antibiotic usage, country of origin, and delivery type
AL Goallec, BT Tierney, JM Luber, EM Cofer, AD Kostic, CJ Patel
PLOS Computational Biology 16 (5), 1-21, 2020
222020
Modeling transcriptional regulation of model species with deep learning
EM Cofer, J Raimundo, A Tadych, Y Yamazaki, AK Wong, CL Theesfeld, ...
Genome Research 31 (6), 1097-1105, 2021
8*2021
AMBIENT: accelerated convolutional neural network architecture search for regulatory genomics
Z Zhang, EM Cofer, OG Troyanskaya
bioRxiv, 2021.02. 25.432960, 2021
52021
Aether: leveraging linear programming for optimal cloud computing in genomics
JM Luber, BT Tierney, EM Cofer, CJ Patel, AD Kostic
Bioinformatics 1, 3, 2017
52017
Saturating the eQTL map in Drosophila melanogaster: genome-wide patterns of cis and trans regulation of transcriptional variation in outbred populations
LF Pallares, D Melo, S Wolf, EM Cofer, V Abhyankar, J Peng, JF Ayroles
bioRxiv, 2023.05. 20.541576, 2023
22023
A Computational Approach to the Study of Regulatory Genomics
EM Cofer
Princeton, NJ: Princeton University, 2023
2023
Translating genetic risk variants in disease‐associated enhancers into novel mouse models of Alzheimer’s disease: Development of new models and analysis methods/novel assays …
C Preuss, X Chen, K Chen, C Theesfeld, E Cofer, A Uyar, GA Cary, ...
Alzheimer's & Dementia 16, e040529, 2020
2020
The Rate of Somatic Mutations in Aging Mice
EM Cofer
2017
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Articles 1–11