| UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011 | 14115 | 2011 |
| VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016 | 7464 | 2016 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2185 | 2017 |
| Binning metagenomic contigs by coverage and composition J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ... Nature methods 11 (11), 1144-1146, 2014 | 1807 | 2014 |
| Removing noise from pyrosequenced amplicons C Quince, A Lanzen, RJ Davenport, PJ Turnbaugh BMC bioinformatics 12, 1-18, 2011 | 1662 | 2011 |
| Shotgun metagenomics, from sampling to analysis C Quince, AW Walker, JT Simpson, NJ Loman, N Segata Nature biotechnology 35 (9), 833-844, 2017 | 1567 | 2017 |
| Anvi’o: an advanced analysis and visualization platform for ‘omics data AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison, ML Sogin, ... PeerJ 3, e1319, 2015 | 1493 | 2015 |
| Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section HE Jakobsson, TR Abrahamsson, MC Jenmalm, K Harris, C Quince, ... Gut 63 (4), 559-566, 2014 | 1214 | 2014 |
| Accurate determination of microbial diversity from 454 pyrosequencing data C Quince, A Lanzén, TP Curtis, RJ Davenport, N Hall, IM Head, LF Read, ... Nature methods 6 (9), 639-641, 2009 | 1182 | 2009 |
| Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ... Cell 176 (3), 649-662. e20, 2019 | 1179 | 2019 |
| VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé | 940 | 2016 |
| Enterotypes in the landscape of gut microbial community composition PI Costea, F Hildebrand, M Arumugam, F Bäckhed, MJ Blaser, ... Nature microbiology 3 (1), 8-16, 2018 | 863 | 2018 |
| Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform M Schirmer, UZ Ijaz, R D'Amore, N Hall, WT Sloan, C Quince Nucleic acids research 43 (6), e37-e37, 2015 | 831 | 2015 |
| Swarm: robust and fast clustering method for amplicon-based studies F Mahé, T Rognes, C Quince, C de Vargas, M Dunthorn PeerJ 2, e593, 2014 | 816 | 2014 |
| Dirichlet multinomial mixtures: generative models for microbial metagenomics I Holmes, K Harris, C Quince PloS one 7 (2), e30126, 2012 | 768 | 2012 |
| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 733 | 2017 |
| Challenges in microbial ecology: building predictive understanding of community function and dynamics S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ... The ISME journal 10 (11), 2557-2568, 2016 | 660 | 2016 |
| Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins PJ Turnbaugh, C Quince, JJ Faith, AC McHardy, T Yatsunenko, F Niazi, ... Proceedings of the National Academy of Sciences 107 (16), 7503-7508, 2010 | 605 | 2010 |
| Swarm v2: highly-scalable and high-resolution amplicon clustering F Mahé, T Rognes, C Quince, C De Vargas, M Dunthorn PeerJ 3, e1420, 2015 | 515 | 2015 |
| Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ... Nature microbiology 3 (7), 804-813, 2018 | 475 | 2018 |
Alice Carolyn McHardyHelmholtz Centre for Infection Research, GermanyVerified email at helmholtz-hzi.de
