| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... Nature 486, 215-221, 2012 | 2228* | 2012 |
| A single-cell survey of the small intestinal epithelium AL Haber, M Biton, N Rogel, RH Herbst, K Shekhar, C Smillie, G Burgin, ... Nature 551 (7680), 333-339, 2017 | 1206 | 2017 |
| Mobility of plasmids C Smillie, MP Garcillán-Barcia, MV Francia, EPC Rocha, F de la Cruz Microbiology and Molecular Biology Reviews 74 (3), 434-452, 2010 | 1165 | 2010 |
| Ecology drives a global network of gene exchange connecting the human microbiome CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm Nature 480 (7376), 241-244, 2011 | 892 | 2011 |
| Intra-and inter-cellular rewiring of the human colon during ulcerative colitis CS Smillie, M Biton, J Ordovas-Montanes, KM Sullivan, G Burgin, ... Cell 178 (3), 714-730. e22, 2019 | 735 | 2019 |
| T helper cell cytokines modulate intestinal stem cell renewal and differentiation M Biton, AL Haber, N Rogel, G Burgin, S Beyaz, A Schnell, O Ashenberg, ... Cell 175 (5), 1307-1320. e22, 2018 | 397 | 2018 |
| A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ... Nature medicine 26 (5), 792-802, 2020 | 337 | 2020 |
| Unraveling the processes shaping mammalian gut microbiomes over evolutionary time M Groussin, F Mazel, JG Sanders, CS Smillie, S Lavergne, W Thuiller, ... Nature Communications 8 (1), 14319, 2017 | 335 | 2017 |
| Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease E Papa, M Docktor, C Smillie, S Weber, SP Preheim, D Gevers, ... PLoS ONE 7 (6), e39242, 2012 | 314 | 2012 |
| Strain tracking reveals the determinants of bacterial engraftment in the human gut following fecal microbiota transplantation CS Smillie, J Sauk, D Gevers, J Friedman, J Sung, I Youngster, ... Cell host & microbe 23 (2), 229-240. e5, 2018 | 308 | 2018 |
| The human and mouse enteric nervous system at single-cell resolution E Drokhlyansky, CS Smillie, N Van Wittenberghe, M Ericsson, GK Griffin, ... Cell 182 (6), 1606-1622. e23, 2020 | 280 | 2020 |
| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 273 | 2021 |
| Mobile genes in the human microbiome are structured from global to individual scales IL Brito, S Yilmaz, K Huang, L Xu, SD Jupiter, AP Jenkins, W Naisilisili, ... Nature 535 (7612), 435-439, 2016 | 236 | 2016 |
| Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome T Jarvik, C Smillie, EA Groisman, H Ochman Journal of bacteriology 192 (2), 560-567, 2010 | 235 | 2010 |
| Microbial reprogramming inhibits Western diet-associated obesity T Poutahidis, M Kleinewietfeld, C Smillie, T Levkovich, A Perrotta, S Bhela, ... PloS one 8 (7), e68596, 2013 | 198 | 2013 |
| Probiotic bacteria induce a ‘glow of health’ T Levkovich, T Poutahidis, C Smillie, BJ Varian, YM Ibrahim, JR Lakritz, ... PloS one 8 (1), e53867, 2013 | 197 | 2013 |
| Spatially organized multicellular immune hubs in human colorectal cancer K Pelka, M Hofree, JH Chen, S Sarkizova, JD Pirl, V Jorgji, A Bejnood, ... Cell 184 (18), 4734-4752. e20, 2021 | 189 | 2021 |
| Natural bacterial communities serve as quantitative geochemical biosensors MB Smith, AM Rocha, CS Smillie, SW Olesen, C Paradis, L Wu, ... MBio 6 (3), 10.1128/mbio. 00326-15, 2015 | 188 | 2015 |
| Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions MR Filbin, A Mehta, AM Schneider, KR Kays, JR Guess, M Gentili, ... Cell Reports Medicine 2 (5), 2021 | 151 | 2021 |
| Two dynamic regimes in the human gut microbiome SM Gibbons, SM Kearney, CS Smillie, EJ Alm PLoS computational biology 13 (2), e1005364, 2017 | 103 | 2017 |
