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Christopher R Kinsinger
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Proteogenomics connects somatic mutations to signalling in breast cancer
P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ...
Nature 534 (7605), 55-62, 2016
13162016
Proteogenomic characterization of human colon and rectal cancer
B Zhang, J Wang, X Wang, J Zhu, Q Liu, Z Shi, MC Chambers, ...
Nature 513 (7518), 382-387, 2014
12472014
Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma
TA Addona, SE Abbatiello, B Schilling, SJ Skates, DR Mani, DM Bunk, ...
Nature biotechnology 27 (7), 633-641, 2009
10732009
Integrated proteogenomic characterization of human high-grade serous ovarian cancer
H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ...
Cell 166 (3), 755-765, 2016
7442016
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ...
Nature biotechnology 26 (8), 889-896, 2008
5922008
Repeatability and reproducibility in proteomic identifications by liquid chromatography− tandem mass spectrometry
DL Tabb, L Vega-Montoto, PA Rudnick, AM Variyath, AJL Ham, DM Bunk, ...
Journal of proteome research 9 (2), 761-776, 2010
5582010
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach
SA Carr, SE Abbatiello, BL Ackermann, C Borchers, B Domon, ...
Molecular & Cellular Proteomics 13 (3), 907-917, 2014
5042014
Proteogenomic analysis of human colon cancer reveals new therapeutic opportunities
S Vasaikar, C Huang, X Wang, VA Petyuk, SR Savage, B Wen, Y Dou, ...
Cell 177 (4), 1035-1049. e19, 2019
3972019
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
2902019
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
2742020
Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium
MJ Ellis, M Gillette, SA Carr, AG Paulovich, RD Smith, KK Rodland, ...
Cancer discovery 3 (10), 1108-1112, 2013
2142013
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
2022020
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
1912021
Recommendations for the generation, quantification, storage, and handling of peptides used for mass spectrometry–based assays
AN Hoofnagle, JR Whiteaker, SA Carr, E Kuhn, T Liu, SA Massoni, ...
Clinical chemistry 62 (1), 48-69, 2016
1812016
Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses
PA Rudnick, KR Clauser, LE Kilpatrick, DV Tchekhovskoi, P Neta, ...
Molecular & Cellular Proteomics 9 (2), 225-241, 2010
1812010
Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance
AG Paulovich, D Billheimer, AJL Ham, L Vega-Montoto, PA Rudnick, ...
Molecular & Cellular Proteomics 9 (2), 242-254, 2010
1722010
Large-scale interlaboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma
SE Abbatiello, B Schilling, DR Mani, LJ Zimmerman, SC Hall, B MacLean, ...
Molecular & Cellular Proteomics 14 (9), 2357-2374, 2015
1682015
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456. e31, 2020
1572020
CPTAC Assay Portal: a repository of targeted proteomic assays
JR Whiteaker, GN Halusa, AN Hoofnagle, V Sharma, B MacLean, P Yan, ...
Nature methods 11 (7), 703-704, 2014
1362014
Proteogenomic integration reveals therapeutic targets in breast cancer xenografts
K Huang, S Li, P Mertins, S Cao, HP Gunawardena, KV Ruggles, ...
Nature communications 8 (1), 14864, 2017
1322017
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