Frank Aarestrup
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Identification of acquired antimicrobial resistance genes
E Zankari, H Hasman, S Cosentino, M Vestergaard, S Rasmussen, ...
Journal of antimicrobial chemotherapy 67 (11), 2640-2644, 2012
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
A Carattoli, E Zankari, A García-Fernández, M Voldby Larsen, O Lund, ...
Antimicrobial agents and chemotherapy 58 (7), 3895-3903, 2014
Multilocus sequence typing of total-genome-sequenced bacteria
MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ...
Journal of clinical microbiology 50 (4), 1355-1361, 2012
ResFinder 4.0 for predictions of phenotypes from genotypes
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
KG Joensen, F Scheutz, O Lund, H Hasman, RS Kaas, EM Nielsen, ...
Journal of clinical microbiology 52 (5), 1501-1510, 2014
Quinolone and macrolide resistance in Campylobacter jejuni and C. coli: resistance mechanisms and trends in human isolates.
J Engberg, FM Aarestrup, DE Taylor, P Gerner-Smidt, I Nachamkin
Emerging infectious diseases 7 (1), 24, 2001
Effect of abolishment of the use of antimicrobial agents for growth promotion on occurrence of antimicrobial resistance in fecal enterococci from food animals in Denmark
FM Aarestrup, AM Seyfarth, HD Emborg, K Pedersen, RS Hendriksen, ...
Antimicrobial Agents and chemotherapy 45 (7), 2054-2059, 2001
Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock
LB Price, M Stegger, H Hasman, M Aziz, J Larsen, PS Andersen, ...
MBio 3 (1), 10.1128/mbio. 00305-11, 2012
Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data
KG Joensen, AMM Tetzschner, A Iguchi, FM Aarestrup, F Scheutz
Journal of clinical microbiology 53 (8), 2410-2426, 2015
Global Monitoring of Salmonella Serovar Distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: Results of …
RS Hendriksen, AR Vieira, S Karlsmose, DMA Lo Fo Wong, AB Jensen, ...
Foodborne pathogens and disease 8 (8), 887-900, 2011
Solving the problem of comparing whole bacterial genomes across different sequencing platforms
RS Kaas, P Leekitcharoenphon, FM Aarestrup, O Lund
PloS one 9 (8), e104984, 2014
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1124, 2019
An outbreak of multidrug-resistant, quinolone-resistant Salmonella enterica serotype Typhimurium DT104
K Mølbak, DL Baggesen, FM Aarestrup, JM Ebbesen, J Engberg, ...
New England Journal of Medicine 341 (19), 1420-1425, 1999
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
E Zankari, R Allesøe, KG Joensen, LM Cavaco, O Lund, FM Aarestrup
Journal of Antimicrobial Chemotherapy 72 (10), 2764-2768, 2017
qnrD, a Novel Gene Conferring Transferable Quinolone Resistance in Salmonella enterica Serovar Kentucky and Bovismorbificans Strains of Human Origin
LM Cavaco, H Hasman, S Xia, FM Aarestrup
Antimicrobial agents and chemotherapy 53 (2), 603-608, 2009
Comparison of antimicrobial resistance phenotypes and resistance genes in Enterococcus faecalis and Enterococcus faecium from humans in the community, broilers, and pigs in Denmark
FM Aarestrup, Y Agerso, P Gerner–Smidt, M Madsen, LB Jensen
Diagnostic microbiology and infectious disease 37 (2), 127-137, 2000
Veterinary drug usage and antimicrobial resistance in bacteria of animal origin
FM Aarestrup
Basic & clinical pharmacology & toxicology 96 (4), 271-281, 2005
Rapid and precise alignment of raw reads against redundant databases with KMA
PTLC Clausen, FM Aarestrup, O Lund
BMC bioinformatics 19, 1-8, 2018
Avoparcin used as a growth promoter is associated with the occurrence of vancomycin-resistant Enterococcus faecium on Danish poultry and pig farms
F Bager, M Madsen, J Christensen, FM Aarestrup
Preventive veterinary medicine 31 (1-2), 95-112, 1997
Resistance in bacteria of the food chain: epidemiology and control strategies
FM Aarestrup, HC Wegener, P Collignon
Expert review of anti-infective therapy 6 (5), 733-750, 2008
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