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Olga Kalinina
Olga Kalinina
Helmholtz Institute for Pharmaceutical Research Saarland
Verified email at helmholtz-hzi.de - Homepage
Title
Cited by
Cited by
Year
Impact of genome reduction on bacterial metabolism and its regulation
E Yus, T Maier, K Michalodimitrakis, V van Noort, T Yamada, WH Chen, ...
science 326 (5957), 1263-1268, 2009
3462009
Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
OV Kalinina, AA Mironov, MS Gelfand, AB Rakhmaninova
Protein Science 13 (2), 443-456, 2004
1512004
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins
OV Kalinina, PS Novichkov, AA Mironov, MS Gelfand, AB Rakhmaninova
Nucleic acids research 32 (suppl 2), W424-W428, 2004
1032004
Comparative genomics of regulation of heavy metal resistance in Eubacteria
EA Permina, AE Kazakov, OV Kalinina, MS Gelfand
BMC microbiology 6 (1), 1-11, 2006
922006
An automated stochastic approach to the identification of the protein specificity determinants and functional subfamilies
PV Mazin, MS Gelfand, AA Mironov, AB Rakhmaninova, AR Rubinov, ...
Algorithms for Molecular Biology 5 (1), 1-12, 2010
662010
Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases
A Zeke, T Bastys, A Alexa, Á Garai, B Mészáros, K Kirsch, Z Dosztányi, ...
Molecular systems biology 11 (11), 837, 2015
622015
Combining specificity determining and conserved residues improves functional site prediction
OV Kalinina, MS Gelfand, RB Russell
BMC bioinformatics 10 (1), 1-24, 2009
502009
StructMAn: annotation of single-nucleotide polymorphisms in the structural context
A Gress, V Ramensky, J Büch, A Keller, OV Kalinina
Nucleic acids research 44 (W1), W463-W468, 2016
352016
Combinations of protein-chemical complex structures reveal new targets for established drugs
OV Kalinina, O Wichmann, G Apic, RB Russell
PLOS computational biology 7 (5), e1002043, 2011
342011
Enthalpy–Entropy Compensation upon Molecular Conformational Changes
M Ahmad, V Helms, T Lengauer, OV Kalinina
Journal of Chemical Theory and Computation 11 (4), 1410-1418, 2015
332015
Modelling binding between CCR5 and CXCR4 receptors and their ligands suggests the surface electrostatic potential of the co-receptor to be a key player in the HIV-1 tropism
OV Kalinina, N Pfeifer, T Lengauer
Retrovirology 10 (1), 130, 2013
292013
Targeting actin inhibits repair of doxorubicin-induced DNA damage: a novel therapeutic approach for combination therapy
L Pfitzer, C Moser, F Gegenfurtner, A Arner, F Foerster, C Atzberger, ...
Cell death & disease 10 (4), 1-14, 2019
252019
Spatial distribution of disease-associated variants in three-dimensional structures of protein complexes
A Gress, V Ramensky, OV Kalinina
Oncogenesis 6 (9), e380-e380, 2017
212017
Detection of atypical genes in virus families using a one-class SVM
S Metzler, OV Kalinina
BMC genomics 15 (1), 1-12, 2014
202014
DIGGER: exploring the functional role of alternative splicing in protein interactions
Z Louadi, K Yuan, A Gress, O Tsoy, OV Kalinina, J Baumbach, ...
Nucleic Acids Research, 2020
182020
Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications
NJ Oparina, OV Kalinina, MS Gelfand, LL Kisselev
Nucleic acids research 33 (16), 5226-5234, 2005
182005
Adenosine‐to‐Inosine RNA Editing in Mouse and Human Brain Proteomes
LI Levitsky, AA Kliuchnikova, KG Kuznetsova, DS Karpov, MV Ivanov, ...
Proteomics 19 (23), 1900195, 2019
162019
ProtChemSI: a network of protein–chemical structural interactions
OV Kalinina, O Wichmann, G Apic, RB Russell
Nucleic acids research 40 (D1), D549-D553, 2012
162012
BALL-SNP: combining genetic and structural information to identify candidate non-synonymous single nucleotide polymorphisms
SC Mueller, C Backes, OV Kalinina, B Meder, D Stöckel, HP Lenhof, ...
Genome medicine 7 (1), 1-8, 2015
152015
Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses
S Caprari, S Metzler, T Lengauer, OV Kalinina
Viruses 7 (10), 5388-5409, 2015
152015
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