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Rui Alves
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Tools for kinetic modeling of biochemical networks
R Alves, F Antunes, A Salvador
Nature biotechnology 24 (6), 667-672, 2006
2472006
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7 (1), 1-17, 2015
2452015
Saccharomyces cerevisiae as a model organism: a comparative study
H Karathia, E Vilaprinyo, A Sorribas, R Alves
PloS one 6 (2), e16015, 2011
2302011
Lipid peroxidation in mitochondrial inner membranes. I. An integrative kinetic model
F Antunes, A Salvador, HS Marinho, R Alves, RE Pinto
Free Radical Biology and Medicine 21 (7), 917-943, 1996
1781996
Comparative analysis of prototype two‐component systems with either bifunctional or monofunctional sensors: differences in molecular structure and physiological function
R Alves, MA Savageau
Molecular microbiology 48 (1), 25-51, 2003
1212003
Revisiting trade-offs between Rubisco kinetic parameters
AI Flamholz, N Prywes, U Moran, D Davidi, YM Bar-On, LM Oltrogge, ...
Biochemistry 58 (31), 3365-3376, 2019
1152019
Evolution of enzymes in metabolism: a network perspective
R Alves, RAG Chaleil, MJE Sternberg
Journal of molecular biology 320 (4), 751-770, 2002
1062002
Hysteretic and graded responses in bacterial two‐component signal transduction
OA Igoshin, R Alves, MA Savageau
Molecular microbiology 68 (5), 1196-1215, 2008
922008
Extending the method of mathematically controlled comparison to include numerical comparisons
R Alves, MA Savageau
Bioinformatics 16 (9), 786-798, 2000
922000
Systemic properties of ensembles of metabolic networks: application of graphical and statistical methods to simple unbranched pathways
R Alves, MA Savageau
Bioinformatics 16 (6), 534-547, 2000
812000
An in vitro system for the rapid functional characterization of genes involved in carotenoid biosynthesis and accumulation
C Bai, SM Rivera, V Medina, R Alves, E Vilaprinyo, A Sorribas, R Canela, ...
The Plant Journal 77 (3), 464-475, 2014
782014
Relative amino acid composition signatures of organisms and environments
A Moura, MA Savageau, R Alves
PloS one 8 (10), e77319, 2013
772013
Cooperativity and saturation in biochemical networks: a saturable formalism using Taylor series approximations
A Sorribas, B Hernández‐Bermejo, E Vilaprinyo, R Alves
Biotechnology and bioengineering 97 (5), 1259-1277, 2007
762007
Evolution and cellular function of monothiol glutaredoxins: involvement in iron–sulphur cluster assembly
F Vilella, R Alves, MT Rodríguez‐Manzaneque, G Bellí, S Swaminathan, ...
Comparative and functional genomics 5 (4), 328-341, 2004
702004
Effect of overall feedback inhibition in unbranched biosynthetic pathways
R Alves, MA Savageau
Biophysical journal 79 (5), 2290-2304, 2000
692000
Comparing systemic properties of ensembles of biological networks by graphical and statistical methods
R Alves, MA Savageau
Bioinformatics 16 (6), 527-533, 2000
592000
Evaluating multi-locus phylogenies for species boundaries determination in the genus Diaporthe
L Santos, A Alves, R Alves
PeerJ 5, e3120, 2017
562017
Use of physiological constraints to identify quantitative design principles for gene expression in yeast adaptation to heat shock
E Vilaprinyo, R Alves, A Sorribas
BMC bioinformatics 7 (1), 1-20, 2006
532006
Predictive reconstruction of the mitochondrial iron‐sulfur cluster assembly metabolism. II. Role of glutaredoxin Grx5
R Alves, E Herrero, A Sorribas
Proteins: Structure, Function, and Bioinformatics 57 (3), 481-492, 2004
472004
Evolution based on domain combinations: the case of glutaredoxins
R Alves, E Vilaprinyo, A Sorribas, E Herrero
BMC Evolutionary Biology 9, 1-14, 2009
442009
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Articles 1–20