Alfonso Valencia

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Martin Krallinger*Head of Text Mining Unit, Barcelona Supercomputing Center (BSC-CNS)Verified email at bsc.es
David JuanInstitut de Biologia Evolutiva (UPF-CSIC)Verified email at upf.edu
Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Florian LeitnerData Catalytics, ION Analytics, IE UniversityVerified email at datacatalytics.com
Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
Luis Sanchez-PulidoSenior Investigator Scientist IGC HG-MRC University of EdinburghVerified email at ed.ac.uk
Ana M Rojas-Mendoza (0000-0003-07...CSIC Research Scientist, Group Leader, Bioinformatics and Computational Biology, Centro Andaluz deVerified email at upo.es
Iakes EzkurdiaSpanish National Cardiovascular Research Center CNICVerified email at cnic.es
Miguel AndradeJohannes-Gutenberg University in MainzVerified email at uni-mainz.de
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
Daniel RicoBiosciences InstituteVerified email at newcastle.ac.uk
ENRIQUE CARRILLO DE SANTA PAU...IMDEA Food InstituteVerified email at imdea.org
Vera PancaldiCentre de Recherches en Cancérologie de Toulouse (Inserm) & Université Toulouse III Paul SabatierVerified email at inserm.fr
Tirso PonsCNB-CSIC, MadridVerified email at cnb.csic.es
Peer BorkDirector of EMBL HeidelbergVerified email at embl.de
Burkhard RostProfessor of Computer Science & Computational Biology & Bioinformatics, TUM, MunichVerified email at tum.de
Tabares-Seisdedos, RafaelFull Professor of PsychiatryVerified email at uv.es
Jose RodriguezCardiovascular Proteomics, Spanish National Center for Cardiovascular Research (CNIC)Verified email at cnic.es
Anaïs BaudotCNRS - Inserm - AMUVerified email at univ-amu.fr
Federico AbascalCancer, Aging and Somatic Mutation, Wellcome Sanger InstituteVerified email at sanger.ac.uk

Alfonso Valencia

ICREA Professor. Barcelona Supercomputing Center.

Verified email at bsc.es - Homepage

computational biology bioinformatics cancer genomics text mining protein evolution.


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012	12121	2012
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	5725	2007
GENCODE: the reference human genome annotation for The ENCODE Project J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ... Genome research 22 (9), 1760-1774, 2012	4618	2012
International network of cancer genome projects Data coordination centre Kasprzyk (Leader) Arek 1 Stein (Leader) Lincoln D ... Nature 464 (7291), 993-998, 2010	2057	2010
Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia XS Puente, M Pinyol, V Quesada, L Conde, GR Ordóñez, N Villamor, ... Nature 475 (7354), 101-105, 2011	1720	2011
A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS Biology 9 (4), e1001046, 2011	1354	2011
Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia V Quesada, L Conde, N Villamor, GR Ordóñez, P Jares, L Bassaganyas, ... Nature genetics 44 (1), 47-52, 2012	1124	2012
IntAct: an open source molecular interaction database H Hermjakob, L Montecchi‐Palazzi, C Lewington, S Mudali, S Kerrien, ... Nucleic acids research 32 (suppl_1), D452-D455, 2004	1093	2004
Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020	1047*	2020
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins. P Bork, C Sander, A Valencia Proceedings of the National Academy of Sciences 89 (16), 7290-7294, 1992	1040	1992
Correlated mutations and residue contacts in proteins U Göbel, C Sander, R Schneider, A Valencia Proteins: Structure, Function, and Bioinformatics 18 (4), 309-317, 1994	1003	1994
The allelic landscape of human blood cell trait variation and links to common complex disease WJ Astle, H Elding, T Jiang, D Allen, D Ruklisa, AL Mann, D Mead, ... Cell 167 (5), 1415-1429. e19, 2016	919	2016
Non-coding recurrent mutations in chronic lymphocytic leukaemia XS Puente, S Beà, R Valdés-Mas, N Villamor, J Gutiérrez-Abril, ... Nature 526 (7574), 519-524, 2015	851	2015
A hierarchical unsupervised growing neural network for clustering gene expression patterns J Herrero, A Valencia, J Dopazo Bioinformatics 17 (2), 126-136, 2001	783	2001
Distinct DNA methylomes of newborns and centenarians H Heyn, N Li, HJ Ferreira, S Moran, DG Pisano, A Gomez, J Diez, ... Proceedings of the National Academy of Sciences 109 (26), 10522-10527, 2012	756	2012
The ras protein family: evolutionary tree and role of conserved amino acids A Valencia, P Chardin, A Wittinghofer, C Sander Biochemistry 30 (19), 4637-4648, 1991	742	1991
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ... Human molecular genetics 23 (22), 5866-5878, 2014	690	2014
Correlated mutations contain information about protein-protein interaction F Pazos, M Helmer-Citterich, G Ausiello, A Valencia Journal of molecular biology 271 (4), 511-523, 1997	667	1997
Automatic extraction of biological information from scientific text: protein-protein interactions. C Blaschke, MA Andrade, CA Ouzounis, A Valencia Ismb 7, 60-67, 1999	641	1999
A gene network for navigating the literature R Hoffmann, A Valencia Nature genetics 36 (7), 664-664, 2004	640	2004

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