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David Safranek
David Safranek
assistant professor, Masaryk university, Faculty of informatics
Adresã de e-mail confirmatã pe safranek.cz
Titlu
Citat de
Citat de
Anul
On parameter synthesis by parallel model checking
J Barnat, L Brim, A Krejci, A Streck, D Safranek, M Vejnar, T Vejpustek
IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (3), 693-705, 2011
762011
Polyhydroxyalkanoates synthesis by halophiles and thermophiles: towards sustainable production of microbial bioplastics
S Obruèa, P Dvoøák, P Sedláèek, M Koller, K Sedláø, I Pernicová, ...
Biotechnology Advances 58, 107906, 2022
632022
Exploring parameter space of stochastic biochemical systems using quantitative model checking
L Brim, M Èe¹ka, S Dra¾an, D ©afránek
International Conference on Computer Aided Verification, 107-123, 2013
622013
STL⁎: Extending signal temporal logic with signal-value freezing operator
L Brim, P Dluho¹, D ©afránek, T Vejpustek
Information and computation 236, 52-67, 2014
582014
Model checking of biological systems
L Brim, M Èe¹ka, D ©afránek
International School on Formal Methods for the Design of Computer …, 2013
542013
Parameter identification and model ranking of thomas networks
H Klarner, A Streck, D ©afránek, J Kolèák, H Siebert
International Conference on Computational Methods in Systems Biology, 207-226, 2012
392012
AEON: attractor bifurcation analysis of parametrised Boolean networks
N Bene¹, L Brim, J Kadlecaj, S Pastva, D ©afránek
Computer Aided Verification: 32nd International Conference, CAV 2020, Los …, 2020
362020
Parameter synthesis by parallel coloured CTL model checking
L Brim, M Èe¹ka, M Demko, S Pastva, D ©afránek
International Conference on Computational Methods in Systems Biology, 251-263, 2015
352015
Parallel model checking large-scale genetic regulatory networks with DiVinE
J Barnat, L Brim, I Cerná, S Drazan, D Safránek
Electronic Notes in Theoretical Computer Science 194 (3), 35-50, 2008
342008
High-performance analysis of biological systems dynamics with the DiVinE model checker
J Barnat, L Brim, D ©afránek
Briefings in Bioinformatics 11 (3), 301-312, 2010
332010
Biodivine: A framework for parallel analysis of biological models
J Barnat, L Brim, I Èerná, S Dra¾an, J Fabriková, J Láník, D ©afránek, ...
arXiv preprint arXiv:0910.0928, 2009
302009
E-photosynthesis: Web-based platform for modeling of complex photosynthetic processes
D ©afránek, J Èervený, M Klement, J Pospí¹ilová, L Brim, D Lazár, ...
BioSystems 103 (2), 115-124, 2011
262011
A model checking approach to discrete bifurcation analysis
N Bene¹, L Brim, M Demko, S Pastva, D ©afránek
FM 2016: Formal Methods: 21st International Symposium, Limassol, Cyprus …, 2016
232016
Abstraction of biochemical reaction systems on polytopes
PJ Collins, L Habets, JH van Schuppen, I Èerná, J Fabriková, D ©afránek
IFAC Proceedings Volumes 44 (1), 14869-14875, 2011
222011
Parallel SMT-based parameter synthesis with application to piecewise multi-affine systems
N Bene¹, L Brim, M Demko, S Pastva, D ©afránek
Automated Technology for Verification and Analysis: 14th International …, 2016
212016
Robustness analysis of stochastic biochemical systems
M Èeska, D ©afránek, S Dra¾an, L Brim
PloS one 9 (4), e94553, 2014
212014
Biochemical space: a framework for systemic annotation of biological models
M Klement, T Dìd, D ©afránek, J Èervený, S Mueller, R Steuer
Electronic Notes in Theoretical Computer Science 306, 31-44, 2014
202014
Robustness analysis for value-freezing signal temporal logic
L Brim, T Vejpustek, D ©afránek, J Fabriková
arXiv preprint arXiv:1309.0867, 2013
202013
On algorithmic analysis of transcriptional regulation by LTL model checking
J Barnat, L Brim, I Cerna, S Drazan, J Fabrikova, D Safranek
Theoretical Computer Science 410 (33-34), 3128-3148, 2009
202009
High-performance discrete bifurcation analysis for piecewise-affine dynamical systems
L Brim, M Demko, S Pastva, D ©afránek
International Workshop on Hybrid Systems Biology, 58-74, 2015
192015
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