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Jian Ren
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GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy
Y Xue, J Ren, X Gao, C Jin, L Wen, X Yao
Molecular & cellular proteomics 7 (9), 1598-1608, 2008
7642008
IBS: an illustrator for the presentation and visualization of biological sequences
W Liu, Y Xie, J Ma, X Luo, P Nie, Z Zuo, U Lahrmann, Q Zhao, Y Zheng, ...
Bioinformatics 31 (20), 3359-3361, 2015
6662015
CSS-Palm 2.0: an updated software for palmitoylation sites prediction
J Ren, L Wen, X Gao, C Jin, Y Xue, X Yao
Protein Engineering, Design & Selection 21 (11), 639-644, 2008
5602008
DOG 1.0: illustrator of protein domain structures
J Ren, L Wen, X Gao, C Jin, Y Xue, X Yao
Cell research 19 (2), 271-273, 2009
5182009
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs
Q Zhao, Y Xie, Y Zheng, S Jiang, W Liu, W Mu, Z Liu, Y Zhao, Y Xue, ...
Nucleic acids research 42 (W1), W325-W330, 2014
4302014
GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection
Y Xue, Z Liu, J Cao, Q Ma, X Gao, Q Wang, C Jin, Y Zhou, L Wen, J Ren
Protein Engineering, Design & Selection 24 (3), 255-260, 2011
2712011
Systematic study of protein sumoylation: Development of a site‐specific predictor of SUMOsp 2.0
J Ren, X Gao, C Jin, M Zhu, X Wang, A Shaw, L Wen, X Yao, Y Xue
Proteomics 9 (12), 3409-3412, 2009
2642009
GPS-SNO: computational prediction of protein S-nitrosylation sites with a modified GPS algorithm
Y Xue, Z Liu, X Gao, C Jin, L Wen, X Yao, J Ren
PloS one 5 (6), e11290, 2010
2542010
Systematic analysis of protein phosphorylation networks from phosphoproteomic data
C Song, M Ye, Z Liu, H Cheng, X Jiang, G Han, Z Songyang, Y Tan, ...
Molecular & Cellular Proteomics 11 (10), 1070-1083, 2012
1742012
CPLM: a database of protein lysine modifications
Z Liu, Y Wang, T Gao, Z Pan, H Cheng, Q Yang, Z Cheng, A Guo, J Ren, ...
Nucleic acids research 42 (D1), D531-D536, 2014
1572014
m6AVar: a database of functional variants involved in m6A modification
Y Zheng, P Nie, D Peng, Z He, M Liu, Y Xie, Y Miao, Z Zuo, J Ren
Nucleic acids research 46 (D1), D139-D145, 2018
1412018
GPS-Lipid: a robust tool for the prediction of multiple lipid modification sites
Y Xie, Y Zheng, H Li, X Luo, Z He, S Cao, Y Shi, Q Zhao, Y Xue, Z Zuo, ...
Scientific reports 6 (1), 1-9, 2016
1182016
GPS-CCD: a novel computational program for the prediction of calpain cleavage sites
Z Liu, J Cao, X Gao, Q Ma, J Ren, Y Xue
PLoS One 6 (4), e19001, 2011
1062011
GPS-YNO2: computational prediction of tyrosine nitration sites in proteins
Z Liu, J Cao, Q Ma, X Gao, J Ren, Y Xue
Molecular BioSystems 7 (4), 1197-1204, 2011
942011
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation
T Gao, Z Liu, Y Wang, H Cheng, Q Yang, A Guo, J Ren, Y Xue
Nucleic acids research 41 (D1), D445-D451, 2013
892013
PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation
J Ren, C Jiang, X Gao, Z Liu, Z Yuan, C Jin, L Wen, Z Zhang, Y Xue, ...
Molecular & cellular proteomics 9 (4), 623-634, 2010
852010
Genome-Wide Identification of a Methylation Gene Panel as a Prognostic Biomarker in Nasopharyngeal CarcinomaA Methylation Gene Panel Predicts Poor Survival in NPC
W Jiang, N Liu, XZ Chen, Y Sun, B Li, XY Ren, WF Qin, N Jiang, YF Xu, ...
Molecular Cancer Therapeutics 14 (12), 2864-2873, 2015
712015
CPLA 1.0: an integrated database of protein lysine acetylation
Z Liu, J Cao, X Gao, Y Zhou, L Wen, X Yang, X Yao, J Ren, Y Xue
Nucleic acids research 39 (suppl_1), D1029-D1034, 2011
702011
A summary of computational resources for protein phosphorylation
Y Xue, X Gao, J Cao, Z Liu, C Jin, L Wen, X Yao, J Ren
Current Protein and Peptide Science 11 (6), 485-496, 2010
672010
GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes
Z Liu, F Yuan, J Ren, J Cao, Y Zhou, Q Yang, Y Xue
PloS one 7 (3), e34370, 2012
582012
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