R loops: new modulators of genome dynamics and function JM Santos-Pereira, A Aguilera Nature Reviews Genetics 16 (10), 583-597, 2015 | 698 | 2015 |
R loops are linked to histone H3 S10 phosphorylation and chromatin condensation M Castellano-Pozo, JM Santos-Pereira, AG Rondón, S Barroso, ... Molecular cell 52 (4), 583-590, 2013 | 298 | 2013 |
The Npl3 hnRNP prevents R-loop-mediated transcription–replication conflicts and genome instability JM Santos-Pereira, AB Herrero, ML García-Rubio, A Marín, S Moreno, ... Genes & development 27 (22), 2445-2458, 2013 | 104 | 2013 |
Topologically associating domains and regulatory landscapes in development, evolution and disease JJ Tena, JM Santos-Pereira Frontiers in cell and developmental biology 9, 702787, 2021 | 50 | 2021 |
CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression M Franke, E De la Calle-Mustienes, A Neto, M Almuedo-Castillo, ... Nature communications 12 (1), 5415, 2021 | 38 | 2021 |
Excess of Yra1 RNA-binding factor causes transcription-dependent genome instability, replication impairment and telomere shortening S Gavaldá, JM Santos-Pereira, ML García-Rubio, R Luna, A Aguilera PLoS genetics 12 (4), e1005966, 2016 | 38 | 2016 |
Pioneer and repressive functions of p63 during zebrafish embryonic ectoderm specification JM Santos-Pereira, L Gallardo-Fuentes, A Neto, RD Acemel, JJ Tena Nature communications 10 (1), 3049, 2019 | 35 | 2019 |
A genome-wide function of THSC/TREX-2 at active genes prevents transcription–replication collisions JM Santos-Pereira, ML García-Rubio, C González-Aguilera, R Luna, ... Nucleic acids research 42 (19), 12000-12014, 2014 | 25 | 2014 |
Npl3, a new link between RNA-binding proteins and the maintenance of genome integrity JM Santos-Pereira, AB Herrero, S Moreno, A Aguilera Cell Cycle 13 (10), 1524-1529, 2014 | 25 | 2014 |
The Nup84 complex coordinates the DNA damage response to warrant genome integrity H Gaillard, JM Santos-Pereira, A Aguilera Nucleic Acids Research 47 (8), 4054-4067, 2019 | 20 | 2019 |
Genome-wide mapping of histone H3 lysine 4 trimethylation (H3K4me3) and its involvement in fatty acid biosynthesis in sunflower developing seeds AJ Moreno-Pérez, JM Santos-Pereira, R Martins-Noguerol, ... Plants 10 (4), 706, 2021 | 11 | 2021 |
MacroH2As regulate enhancer-promoter contacts affecting enhancer activity and sensitivity to inflammatory cytokines D Corujo, R Malinverni, J Carrillo-Reixach, O Meers, ... Cell reports 39 (12), 2022 | 6 | 2022 |
Functional conservation of divergent p63-bound cis-regulatory elements L Gallardo-Fuentes, JM Santos-Pereira, JJ Tena Frontiers in Genetics 11, 522426, 2020 | 4 | 2020 |
Biomarkers of colorectal cancer: A genome-wide perspective J Santos-Pereira, S Muñoz-Galván Cancer Translational Medicine 2 (6), 2016 | 2 | 2016 |
Hypoxia-induced immortalization of primary cells depends on Tfcp2L1 expression D Otero-Albiol, JM Santos-Pereira, A Lucena-Cacace, ... Cell Death & Disease 15 (2), 177, 2024 | | 2024 |
Essential role of PLD2 in hypoxia-induced stemness and therapy resistance in ovarian tumors S Muñoz-Galván, EM Verdugo-Sivianes, JM Santos-Pereira, ... Journal of Experimental & Clinical Cancer Research 43 (1), 57, 2024 | | 2024 |
Rewiring of the epigenome and chromatin architecture by exogenously induced retinoic acid signaling during zebrafish embryonic development M Moreno-Oñate, L Gallardo-Fuentes, PM Martínez-García, S Naranjo, ... Nucleic Acids Research, gkae065, 2024 | | 2024 |
Suppression of hypoxia-induced stemness and chemoresistance in ovarian tumors S Munoz-Galvan, EM Verdugo-Sivianes, JM Santos-Pereira, ... | | 2023 |
Rewiring of the epigenome and chromatin architecture by retinoic acid signaling during zebrafish embryonic development M Moreno-Onate, L Gallardo-Fuentes, PM Martinez-Garcia, S Naranjo, ... bioRxiv, 2023.06. 13.544553, 2023 | | 2023 |
Role of transcription factors in gene expression regulation during zebrafish embryonic development L Gallardo-Fuentes, MS Magri, M Moreno Oñate, JM Santos-Pereira, ... | | 2022 |