Gryte Satas
Gryte Satas
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Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures
M El-Kebir, G Satas, L Oesper, BJ Raphael
Cell systems 3 (1), 43-53, 2016
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data
L Oesper, G Satas, BJ Raphael
Bioinformatics 30 (24), 3532-3540, 2014
Inferring parsimonious migration histories for metastatic cancers
M El-Kebir, G Satas, BJ Raphael
Nature Genetics 50, 718–726, 2018
SCARLET: single-cell tumor phylogeny inference with copy-number constrained mutation losses
G Satas, S Zaccaria, G Mon, BJ Raphael
Cell systems 10 (4), 323-332. e8, 2020
Tumor phylogeny inference using tree-constrained importance sampling
G Satas, BJ Raphael
Bioinformatics 33 (14), i152-i160, 2017
The clonal evolution of metastatic osteosarcoma as shaped by cisplatin treatment
SW Brady, X Ma, A Bahrami, G Satas, G Wu, S Newman, M Rusch, ...
Molecular Cancer Research 17 (4), 895-906, 2019
CALDER: inferring phylogenetic trees from longitudinal tumor samples
MA Myers, G Satas, BJ Raphael
Cell systems 8 (6), 514-522. e5, 2019
DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution
G Satas, S Zaccaria, M El-Kebir, BJ Raphael
Cell Systems 12 (10), 1004-1018, 2021
Haplotype phasing in single-cell DNA-sequencing data
G Satas, BJ Raphael
Bioinformatics 34 (13), i211-i217, 2018
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells
H Shi, MJ Williams, G Satas, AC Weiner, A McPherson, SP Shah
Nature Communications 15 (1), 2482, 2024
Exploiting allele-specific transcriptional effects of subclonal copy number alterations for genotype-phenotype mapping in cancer cell populations
H Shi, MJ Williams, G Satas, AC Weiner, A McPherson, SP Shah
bioRxiv, 2023
Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer
AW McPherson, I Vazquez-Garcia, MA Myers, M Zatzman, DH Al-Rawi, ...
bioRxiv, 2024.07. 11.602772, 2024
Abstract PR012: Evolutionary dynamics of whole-genome doubling in ovarian cancer
I Vázquez-García, M Myers, MJ Williams, SS Freeman, J Li, H Shi, ...
Cancer Research 84 (3_Supplement_2), PR012-PR012, 2024
Single Cell Whole Genome Measurement of Genomic Heterogeneity and Clonal Evolution in Multiple Myeloma
A McPherson, KH Maclachlan, M Myers, G Satas, O Landgren, SZ Usmani, ...
Blood 142, 4722, 2023
Phylogeny tree generation from mixed samples
BJ Raphael, M El-Kebir, G Satas
US Patent App. 15/858,333, 2018
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