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Pierre-Luc Germain
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Exploratory rearing: a context-and stress-sensitive behavior recorded in the open-field test
O Sturman, PL Germain, J Bohacek
Stress 21 (5), 443-452, 2018
4022018
Multi-omic measurements of heterogeneity in HeLa cells across laboratories
Y Liu, Y Mi, T Mueller, S Kreibich, EG Williams, A Van Drogen, C Borel, ...
Nature biotechnology 37 (3), 314-322, 2019
3032019
Germinal center dysregulation by histone methyltransferase EZH2 promotes lymphomagenesis
M Caganova, C Carrisi, G Varano, F Mainoldi, F Zanardi, PL Germain, ...
The Journal of clinical investigation 123 (12), 5009-5022, 2013
2752013
Doublet identification in single-cell sequencing data using scDblFinder
PL Germain, A Lun, CG Meixide, W Macnair, MD Robinson
F1000Research 10, 2021
2702021
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
HL Crowell, C Soneson, PL Germain, D Calini, L Collin, C Raposo, ...
Nature communications 11 (1), 6077, 2020
229*2020
From cohorts to molecules: Adverse impacts of endocrine disrupting mixtures
N Caporale, M Leemans, L Birgersson, PL Germain, C Cheroni, ...
Science 375 (6582), eabe8244, 2022
1712022
Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma
K Gapp, G van Steenwyk, PL Germain, W Matsushima, KLM Rudolph, ...
Molecular psychiatry 25 (9), 2162-2174, 2020
1692020
7q11. 23 dosage-dependent dysregulation in human pluripotent stem cells affects transcriptional programs in disease-relevant lineages
A Adamo, S Atashpaz, PL Germain, M Zanella, G D'Agostino, V Albertin, ...
Nature genetics 47 (2), 132-141, 2015
1612015
YY1 haploinsufficiency causes an intellectual disability syndrome featuring transcriptional and chromatin dysfunction
M Gabriele, AT Vulto-van Silfhout, PL Germain, A Vitriolo, R Kumar, ...
The American Journal of Human Genetics 100 (6), 907-925, 2017
1312017
Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells
Y Liu, C Borel, L Li, T Müller, EG Williams, PL Germain, M Buljan, T Sajic, ...
Nature communications 8 (1), 1212, 2017
1152017
Dosage analysis of the 7q11.23 Williams region identifies BAZ1B as a major human gene patterning the modern human face and underlying self-domestication
M Zanella, A Vitriolo, A Andirko, PT Martins, S Sturm, T O’Rourke, ...
Science advances 5 (12), eaaw7908, 2019
1092019
Taming human genetic variability: transcriptomic meta-analysis guides the experimental design and interpretation of iPSC-based disease modeling
PL Germain, G Testa
Stem Cell Reports 8 (6), 1784-1796, 2017
912017
Junk or functional DNA? ENCODE and the function controversy
PL Germain, E Ratti, F Boem
Biology & Philosophy 29, 807-831, 2014
872014
pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools
PL Germain, A Sonrel, MD Robinson
Genome biology 21, 1-28, 2020
802020
Cell reprogramming requires silencing of a core subset of polycomb targets
G Fragola, PL Germain, P Laise, A Cuomo, A Blasimme, F Gross, ...
PLoS genetics 9 (2), e1003292, 2013
772013
hLGDB: a database of human lysosomal genes and their regulation
A Brozzi, L Urbanelli, P Luc Germain, A Magini, C Emiliani
Database 2013, bat024, 2013
572013
RNAontheBENCH: computational and empirical resources for benchmarking RNAseq quantification and differential expression methods
PL Germain, A Vitriolo, A Adamo, P Laise, V Das, G Testa
Nucleic acids research 44 (11), 5054-5067, 2016
562016
A complete pupillometry toolbox for real-time monitoring of locus coeruleus activity in rodents
M Privitera, KD Ferrari, LM von Ziegler, O Sturman, SN Duss, ...
Nature protocols 15 (8), 2301-2320, 2020
522020
Cancer cells and adaptive explanations
PL Germain
Biology & philosophy 27, 785-810, 2012
502012
Isoform‐resolved correlation analysis between mRNA abundance regulation and protein level degradation
B Salovska, H Zhu, T Gandhi, M Frank, W Li, G Rosenberger, C Wu, ...
Molecular systems biology 16 (3), e9170, 2020
442020
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