| Identification of cross-linked peptides from complex samples B Yang, YJ Wu, M Zhu, SB Fan, J Lin, K Zhang, S Li, H Chi, YX Li, ... Nature methods 9 (9), 904-906, 2012 | 590 | 2012 |
| A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides ZL Chen, JM Meng, Y Cao, JL Yin, RQ Fang, SB Fan, C Liu, WF Zeng, ... Nature communications 10 (1), 3404, 2019 | 349 | 2019 |
| Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine H Chi, C Liu, H Yang, WF Zeng, L Wu, WJ Zhou, RM Wang, XN Niu, ... Nature biotechnology 36 (11), 1059-1061, 2018 | 288 | 2018 |
| Proteomic mapping of ER–PM junctions identifies STIMATE as a regulator of Ca2+ influx J Jing, L He, A Sun, A Quintana, Y Ding, G Ma, P Tan, X Liang, X Zheng, ... Nature cell biology 17 (10), 1339-1347, 2015 | 229 | 2015 |
| Identification of piRNA binding sites reveals the argonaute regulatory landscape of the C. elegans germline EZ Shen, H Chen, AR Ozturk, S Tu, M Shirayama, W Tang, YH Ding, ... Cell 172 (5), 937-951. e18, 2018 | 211 | 2018 |
| Cryo-EM structure of the exocyst complex K Mei, Y Li, S Wang, G Shao, J Wang, Y Ding, G Luo, P Yue, JJ Liu, ... Nature structural & molecular biology 25 (2), 139-146, 2018 | 137 | 2018 |
| Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states D Tan, Q Li, MJ Zhang, C Liu, C Ma, P Zhang, YH Ding, SB Fan, L Tao, ... Elife 5, e12509, 2016 | 122 | 2016 |
| C-BERST: defining subnuclear proteomic landscapes at genomic elements with dCas9–APEX2 XD Gao, LC Tu, A Mir, T Rodriguez, Y Ding, J Leszyk, J Dekker, ... Nature methods 15 (6), 433-436, 2018 | 118 | 2018 |
| ESCRTs cooperate with a selective autophagy receptor to mediate vacuolar targeting of soluble cargos XM Liu, LL Sun, W Hu, YH Ding, MQ Dong, LL Du Molecular cell 59 (6), 1035-1042, 2015 | 106 | 2015 |
| Terazosin activates Pgk1 and Hsp90 to promote stress resistance X Chen, C Zhao, X Li, T Wang, Y Li, C Cao, Y Ding, M Dong, L Finci, ... Nature chemical biology 11 (1), 19-25, 2015 | 102 | 2015 |
| Architecture of the ATG2B-WDR45 complex and an aromatic Y/HF motif crucial for complex formation JX Zheng, Y Li, YH Ding, JJ Liu, MJ Zhang, MQ Dong, HW Wang, L Yu Autophagy 13 (11), 1870-1883, 2017 | 100 | 2017 |
| ALKBH4-dependent demethylation of actin regulates actomyosin dynamics MM Li, A Nilsen, Y Shi, M Fusser, YH Ding, Y Fu, B Liu, Y Niu, YS Wu, ... Nature communications 4 (1), 1832, 2013 | 93 | 2013 |
| Structural basis for receptor recognition and pore formation of a zebrafish aerolysin‐like protein N Jia, N Liu, W Cheng, YL Jiang, H Sun, LL Chen, J Peng, Y Zhang, ... EMBO reports 17 (2), 235-248, 2016 | 62 | 2016 |
| Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers AX Jones, Y Cao, YL Tang, JH Wang, YH Ding, H Tan, ZL Chen, RQ Fang, ... Nature communications 10 (1), 3911, 2019 | 58 | 2019 |
| CAMKII and Calcineurin regulate the lifespan of Caenorhabditis elegans through the FOXO transcription factor DAF-16 L Tao, Q Xie, YH Ding, ST Li, S Peng, YP Zhang, D Tan, Z Yuan, ... Elife 2, e00518, 2013 | 55 | 2013 |
| Cryo-EM structure and biochemical analysis reveal the basis of the functional difference between human PI3KC3-C1 and-C2 M Ma, JJ Liu, Y Li, Y Huang, N Ta, Y Chen, H Fu, MD Ye, Y Ding, ... Cell research 27 (8), 989-1001, 2017 | 52 | 2017 |
| Increasing the depth of mass-spectrometry-based structural analysis of protein complexes through the use of multiple cross-linkers YH Ding, SB Fan, S Li, BY Feng, N Gao, K Ye, SM He, MQ Dong Analytical chemistry 88 (8), 4461-4469, 2016 | 51 | 2016 |
| Modeling protein excited-state structures from “over-length” chemical cross-links YH Ding, Z Gong, X Dong, K Liu, Z Liu, C Liu, SM He, MQ Dong, C Tang Journal of Biological Chemistry 292 (4), 1187-1196, 2017 | 48 | 2017 |
| Polη O-GlcNAcylation governs genome integrity during translesion DNA synthesis X Ma, H Liu, J Li, Y Wang, YH Ding, H Shen, Y Yang, C Sun, M Huang, ... Nature Communications 8 (1), 1941, 2017 | 38 | 2017 |
| Visualizing the ensemble structures of protein complexes using chemical cross-linking coupled with mass spectrometry Z Gong, YH Ding, X Dong, N Liu, EE Zhang, MQ Dong, C Tang Biophysics reports 1, 127-138, 2015 | 28 | 2015 |
