Mohammed El-Kebir
Mohammed El-Kebir
Assistant Professor
Verified email at - Homepage
Cited by
Cited by
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
Multiscale computational modeling reveals a critical role for TNF-α receptor 1 dynamics in tuberculosis granuloma formation
M Fallahi-Sichani, M El-Kebir, S Marino, DE Kirschner, JJ Linderman
The Journal of Immunology 186 (6), 3472-3483, 2011
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data
M El-Kebir, L Oesper, H Acheson-Field, BJ Raphael
Bioinformatics 31 (12), i62-i70, 2015
Charge group partitioning in biomolecular simulation
S Canzar, M El-Kebir, R Pool, K Elbassioni, AK Malde, AE Mark, ...
Journal of Computational Biology 20 (3), 188-198, 2013
Inferring the mutational history of a tumor using multi-state perfect phylogeny mixtures
M El-Kebir, G Satas, L Oesper, BJ Raphael
Cell systems 3 (1), 43-53, 2016
Inferring parsimonious migration histories for metastatic cancers
M El-Kebir, G Satas, BJ Raphael
Nature genetics 2, 5, 2018
SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error
M El-Kebir
Bioinformatics 34 (17), i671-i679, 2018
A hybrid multi-compartment model of granuloma formation and T cell priming in tuberculosis
S Marino, M El-Kebir, D Kirschner
Journal of theoretical biology 280 (1), 50-62, 2011
Lagrangian relaxation applied to sparse global network alignment
M El-Kebir, J Heringa, GW Klau
Pattern Recognition in Bioinformatics: 6th IAPR International Conference …, 2011
Complexity and algorithms for copy-number evolution problems
M El-Kebir, BJ Raphael, R Shamir, R Sharan, S Zaccaria, M Zehavi, ...
Algorithms for Molecular Biology 12, 1-11, 2017
Phylogenetic copy-number factorization of multiple tumor samples
S Zaccaria, M El-Kebir, GW Klau, BJ Raphael
Journal of Computational Biology 25 (7), 689-708, 2018
Implications of non-uniqueness in phylogenetic deconvolution of bulk DNA samples of tumors
Y Qi, D Pradhan, M El-Kebir
Algorithms for Molecular Biology 14, 1-14, 2019
Natalie 2.0: sparse global network alignment as a special case of quadratic assignment
M El-Kebir, J Heringa, GW Klau
Algorithms 8 (4), 1035-1051, 2015
Solving the maximum-weight connected subgraph problem to optimality
M El-Kebir, GW Klau
arXiv preprint arXiv:1409.5308, 2014
eXamine: Exploring annotated modules in networks
K Dinkla, M El-Kebir, CI Bucur, M Siderius, MJ Smit, MA Westenberg, ...
BMC bioinformatics 15, 1-14, 2014
Summarizing the solution space in tumor phylogeny inference by multiple consensus trees
N Aguse, Y Qi, M El-Kebir
Bioinformatics 35 (14), i408-i416, 2019
metaModules identifies key functional subnetworks in microbiome-related disease
A May, BW Brandt, M El-Kebir, GW Klau, E Zaura, W Crielaard, J Heringa, ...
Bioinformatics 32 (11), 1678-1685, 2016
Development and comprehensive characterization of porcine hepatocellular carcinoma for translational liver cancer investigation
RC Gaba, L Elkhadragy, FE Boas, S Chaki, HH Chen, M El-Kebir, ...
Oncotarget 11 (28), 2686, 2020
Characterization of SARS-CoV-2 viral diversity within and across hosts
P Sashittal, Y Luo, J Peng, M El-Kebir
BioRxiv, 2020.05. 07.083410, 2020
DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution
G Satas, S Zaccaria, M El-Kebir, BJ Raphael
Cell systems 12 (10), 1004-1018. e10, 2021
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