| Exploring the potential of large language models (llms) in learning on graphs Z Chen, H Mao, H Li, W Jin, H Wen, X Wei, S Wang, D Yin, W Fan, H Liu, ... ACM SIGKDD Explorations Newsletter 25 (2), 42-61, 2024 | 238 | 2024 |
| Graph neural networks for multimodal single-cell data integration H Wen, J Ding, W Jin, Y Wang, Y Xie, J Tang Proceedings of the 28th ACM SIGKDD conference on knowledge discovery and …, 2022 | 62 | 2022 |
| Label-free node classification on graphs with large language models (llms) Z Chen, H Mao, H Wen, H Han, W Jin, H Zhang, H Liu, J Tang arXiv preprint arXiv:2310.04668, 2023 | 50 | 2023 |
| Amazon-m2: A multilingual multi-locale shopping session dataset for recommendation and text generation W Jin, H Mao, Z Li, H Jiang, C Luo, H Wen, H Han, H Lu, Z Wang, R Li, ... Advances in Neural Information Processing Systems 36, 2024 | 35 | 2024 |
| Deep learning in single-cell analysis D Molho, J Ding, W Tang, Z Li, H Wen, Y Wang, J Venegas, W Jin, R Liu, ... ACM Transactions on Intelligent Systems and Technology 15 (3), 1-62, 2024 | 26 | 2024 |
| Copyright protection in generative ai: A technical perspective J Ren, H Xu, P He, Y Cui, S Zeng, J Zhang, H Wen, J Ding, P Huang, ... arXiv preprint arXiv:2402.02333, 2024 | 26 | 2024 |
| DANCE: A deep learning library and benchmark platform for single-cell analysis J Ding, R Liu, H Wen, W Tang, Z Li, J Venegas, R Su, D Molho, W Jin, ... Genome Biology 25 (1), 72, 2024 | 16* | 2024 |
| Single-cell multimodal prediction via transformers W Tang, H Wen, R Liu, J Ding, W Jin, Y Xie, H Liu, J Tang Proceedings of the 32nd ACM International Conference on Information and …, 2023 | 12 | 2023 |
| CellPLM: Pre-training of Cell Language Model Beyond Single Cells H Wen, W Tang, X Dai, J Ding, W Jin, Y Xie, J Tang The Twelfth International Conference on Learning Representations, https …, 2024 | 9 | 2024 |
| Single cells are spatial tokens: Transformers for spatial transcriptomic data imputation H Wen, W Tang, W Jin, J Ding, R Liu, X Dai, F Shi, L Shang, H Liu, Y Xie arXiv preprint arXiv:2302.03038, 2023 | 7 | 2023 |
| Exploring the Potential of Large Language Models (LLMs) in Learning on Graph Z Chen, H Mao, H Li, W Jin, H Wen, X Wei, S Wang, D Yin, W Fan, H Liu, ... NeurIPS 2023 Workshop: New Frontiers in Graph Learning, 2023 | 6 | 2023 |
| Investigating out-of-distribution generalization of GNNs: An architecture perspective K Guo, H Wen, W Jin, Y Guo, J Tang, Y Chang Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and …, 2024 | 5 | 2024 |
| Content knowledge identification with multi-agent large language models (LLMs) K Yang, Y Chu, T Darwin, A Han, H Li, H Wen, Y Copur-Gencturk, J Tang, ... International Conference on Artificial Intelligence in Education, 284-292, 2024 | 4 | 2024 |
| A general single-cell analysis framework via conditional diffusion generative models W Tang, R Liu, H Wen, X Dai, J Ding, H Li, W Fan, Y Xie, J Tang bioRxiv, 2023.10. 13.562243, 2023 | 4 | 2023 |
| SpatialCTD: A Large-Scale Tumor Microenvironment Spatial Transcriptomic Dataset to Evaluate Cell Type Deconvolution for Immuno-Oncology J Ding, L Li, Q Lu, J Venegas, Y Wang, L Wu, W Jin, H Wen, R Liu, ... Journal of Computational Biology 31 (9), 871-885, 2024 | 3 | 2024 |
| ITERALIGN: Iterative constitutional alignment of large language models X Chen, H Wen, S Nag, C Luo, Q Yin, R Li, Z Li, W Wang arXiv preprint arXiv:2403.18341, 2024 | 3 | 2024 |
| Are Large Language Models (LLMs) Good Social Predictors? K Yang, H Li, H Wen, TQ Peng, J Tang, H Liu arXiv preprint arXiv:2402.12620, 2024 | 3 | 2024 |
| SpatialCTD: a large-scale TME spatial transcriptomic dataset to evaluate cell type deconvolution for immuno-oncology J Ding, J Venegas, Q Lu, Y Wang, L Wu, W Jin, H Wen, R Liu, W Tang, ... bioRxiv, 2023.04. 11.536333, 2023 | 1 | 2023 |
| Bi-channel Masked Graph Autoencoders for Spatially Resolved Single-cell Transcriptomics Data Imputation H Wen, W Jin, J Ding, C Xu, Y Xie, J Tang NeurIPS 2022 AI for Science: Progress and Promises, 0 | 1 | |
| Revisiting the Graph Reasoning Ability of Large Language Models: Case Studies in Translation, Connectivity and Shortest Path X Dai, Q Wen, Y Shen, H Wen, D Li, J Tang, C Shan arXiv preprint arXiv:2408.09529, 2024 | | 2024 |
