Ilastik: interactive machine learning for (bio) image analysis S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler, C Haubold, ... Nature methods 16 (12), 1226-1232, 2019 | 2015 | 2019 |
A connectome and analysis of the adult Drosophila central brain LK Scheffer, CS Xu, M Januszewski, Z Lu, S Takemura, KJ Hayworth, ... elife 9, e57443, 2020 | 916 | 2020 |
A connectome of a learning and memory center in the adult Drosophila brain S Takemura, Y Aso, T Hige, A Wong, Z Lu, CS Xu, PK Rivlin, H Hess, ... Elife 6, e26975, 2017 | 378 | 2017 |
A Connectome of the Adult Drosophila Central Brain CS Xu, M Januszewski, Z Lu, S Takemura, KJ Hayworth, G Huang, ... BioRxiv, 2020.01. 21.911859, 2020 | 189 | 2020 |
Multicut brings automated neurite segmentation closer to human performance T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ... Nature methods 14 (2), 101-102, 2017 | 180 | 2017 |
neuPrint: Analysis Tools for EM Connectomics J Clements, T Dolafi, L Umayam, NL Neubarth, S Berg, LK Scheffer, ... BioRxiv, 2020.01. 16.909465, 2020 | 77 | 2020 |
Segmenting and Tracking Multiple Dividing Targets Using ilastik C Haubold, M Schiegg, A Kreshuk, S Berg, U Koethe, FA Hamprecht Focus on bio-image informatics, 199-229, 2016 | 59 | 2016 |
neuPrint: An open access tool for EM connectomics SM Plaza, J Clements, T Dolafi, L Umayam, NN Neubarth, LK Scheffer, ... Frontiers in Neuroinformatics 16, 896292, 2022 | 54 | 2022 |
A Connectome of the Male Drosophila Ventral Nerve Cord S Takemura, KJ Hayworth, GB Huang, M Januszewski, Z Lu, EC Marin, ... BioRxiv, 2023.06. 05.543757, 2023 | 46 | 2023 |
Transforming descending input into behavior: The organization of premotor circuits in the Drosophila Male Adult Nerve Cord connectome HSJ Cheong, K Eichler, T Stürner, SK Asinof, AS Champion, EC Marin, ... bioRxiv, 2023.06. 07.543976, 2023 | 41 | 2023 |
Systematic annotation of a complete adult male Drosophila nerve cord connectome reveals principles of functional organisation EC Marin, BJ Morris, T Stürner, AS Champion, D Krzeminski, ... BioRxiv, 2023.06. 05.543407, 2023 | 34 | 2023 |
Large-scale electron microscopy image segmentation in spark SM Plaza, SE Berg arXiv preprint arXiv:1604.00385, 2016 | 17 | 2016 |
Connectome-driven neural inventory of a complete visual system A Nern, F Loesche, S Takemura, LE Burnett, M Dreher, E Gruntman, ... bioRxiv, 2024 | 16 | 2024 |
Accelerated EM connectome reconstruction using 3D visualization and segmentation graphs PM Hubbard, S Berg, T Zhao, DJ Olbris, L Umayam, J Maitin-Shepard, ... BioRxiv, 2020.01. 17.909572, 2020 | 13 | 2020 |
A Connectome of the Adult Drosophila Central Brain. BioRxiv, 2020.01. 21.911859 CS Xu, M Januszewski, Z Lu, S Takemura, KJ Hayworth, G Huang, ... Retrieved 2020-10-27, from https://www. biorxiv. org/content/10.1101/2020.01 …, 2020 | 10 | 2020 |
Adding large EM stack support G Holst, S Berg, K Kare, P Magistretti, C Cali 2016 4th Saudi International Conference on Information Technology (Big Data …, 2016 | 9 | 2016 |
A connectome of a learning and memory center in the adult Drosophila brain. eLife, 6 SY Takemura, Y Aso, T Hige, A Wong, Z Lu, CS Xu, PK Rivlin, H Hess, ... URL: http://dx. doi. org/10.7554/eLife 26975, 2017 | 7 | 2017 |
Connectomic Analysis of Mitochondria in the Central Brain of Drosophila PK Rivlin, M Januszewski, KD Longden, E Neace, LK Scheffer, C Ordish, ... bioRxiv, 2024.04. 21.590464, 2024 | 2 | 2024 |
Rapid and semi-automated extraction of neuronal cell bodies and nuclei from electron microscopy image stacks PS Holcomb, M Morehead, G Doretto, P Chen, S Berg, S Plaza, G Spirou Auditory and Vestibular Research: Methods and Protocols, 277-290, 2016 | 1 | 2016 |
Transforming descending input into behavior: The organization of premotor circuits in theDrosophilaMale Adult Nerve Cord connectome HSJ Cheong, K Eichler, T Stürner, SK Asinof, AS Champion, EC Marin, ... (No Title), 2023 | | 2023 |