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Ilias Georgakopoulos-Soares
Ilias Georgakopoulos-Soares
Adresă de e-mail confirmată pe psu.edu
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Characterizing mutational signatures in human cancer cell lines reveals episodic APOBEC mutagenesis
M Petljak, LB Alexandrov, JS Brammeld, S Price, DC Wedge, ...
Cell 176 (6), 1282-1294. e20, 2019
3672019
EMT factors and metabolic pathways in cancer
I Georgakopoulos-Soares, DV Chartoumpekis, V Kyriazopoulou, ...
Frontiers in oncology 10, 499, 2020
2842020
A practical framework and online tool for mutational signature analyses show intertissue variation and driver dependencies
A Degasperi, TD Amarante, J Czarnecki, S Shooter, X Zou, D Glodzik, ...
Nature cancer 1 (2), 249-263, 2020
1932020
Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis
I Georgakopoulos-Soares, S Morganella, N Jain, M Hemberg, ...
Genome research 28 (9), 1264-1271, 2018
1152018
lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements
MG Gordon, F Inoue, B Martin, M Schubach, V Agarwal, S Whalen, ...
Nature protocols 15 (8), 2387-2412, 2020
832020
Alternative splicing modulation by G-quadruplexes
I Georgakopoulos-Soares, GE Parada, HY Wong, R Medhi, G Furlan, ...
Nature communications 13 (1), 2404, 2022
572022
Deletion of CTCF sites in the SHH locus alters enhancer–promoter interactions and leads to acheiropodia
A Ushiki, Y Zhang, C Xiong, J Zhao, I Georgakopoulos-Soares, L Kane, ...
Nature communications 12 (1), 2282, 2021
462021
High-throughput characterization of the role of non-B DNA motifs on promoter function
I Georgakopoulos-Soares, J Victorino, GE Parada, V Agarwal, J Zhao, ...
Cell genomics 2 (4), 2022
282022
Secondary structures in RNA synthesis, splicing and translation
I Georgakopoulos-Soares, GE Parada, M Hemberg
Computational and structural biotechnology journal 20, 2871-2884, 2022
242022
Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts
I Georgakopoulos-Soares, G Koh, SE Momen, J Jiricny, M Hemberg, ...
Nature communications 11 (1), 1980, 2020
242020
MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development
GE Parada, R Munita, I Georgakopoulos-Soares, HJR Fernandes, ...
Genome biology 22, 1-26, 2021
202021
Surface antibacterial properties enhanced through engineered textures and surface roughness: A review
I Georgakopoulos-Soares, EL Papazoglou, P Karmiris-Obratański, ...
Colloids and Surfaces B: Biointerfaces, 113584, 2023
182023
Transcription factor binding site orientation and order are major drivers of gene regulatory activity
I Georgakopoulos-Soares, C Deng, V Agarwal, CSY Chan, J Zhao, ...
Nature communications 14 (1), 2333, 2023
182023
High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation
I Georgakopoulos-Soares, CSY Chan, N Ahituv, M Hemberg
Genome biology 23 (1), 159, 2022
182022
Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution
I Georgakopoulos-Soares, O Yizhar-Barnea, I Mouratidis, M Hemberg, ...
Genome biology 22, 1-24, 2021
162021
Distinct genomic features across cytolytic subgroups in skin melanoma
C Roufas, I Georgakopoulos-Soares, A Zaravinos
Cancer Immunology, Immunotherapy, 1-18, 2021
142021
MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments
I Georgakopoulos-Soares, N Jain, JM Gray, M Hemberg
Bioinformatics 33 (1), 137-138, 2017
142017
The transcriptomic response of the murine thyroid gland to iodide overload and the role of the Nrf2 antioxidant system
DV Chartoumpekis, PG Ziros, I Georgakopoulos-Soares, AAT Smith, ...
Antioxidants 9 (9), 884, 2020
132020
EMT factors and metabolic pathways in Cancer. Front Oncol. 2020; 10: 499
I Georgakopoulos-Soares, DV Chartoumpekis, V Kyriazopoulou, ...
Epub 2020/04/23. doi: 10.3389/fonc. 2020.00499. pubMed pMID: 32318352 18 (10 …, 2020
122020
The efficacy of tumor mutation burden as a biomarker of response to immune checkpoint inhibitors
C Moeckel, K Bakhl, I Georgakopoulos-Soares, A Zaravinos
International journal of molecular sciences 24 (7), 6710, 2023
112023
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Articole 1–20