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Dmitry Lyumkis
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Crystal structure of a soluble cleaved HIV-1 envelope trimer
JP Julien, A Cupo, D Sok, RL Stanfield, D Lyumkis, MC Deller, PJ Klasse, ...
Science 342 (6165), 1477-1483, 2013
9482013
Appion: an integrated, database-driven pipeline to facilitate EM image processing
GC Lander, SM Stagg, NR Voss, A Cheng, D Fellmann, J Pulokas, ...
Journal of structural biology 166 (1), 95-102, 2009
8682009
Cryo-EM structure of a fully glycosylated soluble cleaved HIV-1 envelope trimer
D Lyumkis, JP Julien, N De Val, A Cupo, CS Potter, PJ Klasse, DR Burton, ...
Science 342 (6165), 1484-1490, 2013
7872013
Addressing preferred specimen orientation in single-particle cryo-EM through tilting
YZ Tan, PR Baldwin, JH Davis, JR Williamson, CS Potter, B Carragher, ...
Nature methods 14 (8), 793-796, 2017
7182017
Challenges and opportunities in cryo-EM single-particle analysis
D Lyumkis
Journal of Biological Chemistry 294 (13), 5181-5197, 2019
3432019
Movies of ice-embedded particles enhance resolution in electron cryo-microscopy
MG Campbell, A Cheng, AF Brilot, A Moeller, D Lyumkis, D Veesler, J Pan, ...
Structure 20 (11), 1823-1828, 2012
3422012
Likelihood-based classification of cryo-EM images using FREALIGN
D Lyumkis, AF Brilot, DL Theobald, N Grigorieff
Journal of structural biology 183 (3), 377-388, 2013
2782013
Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike
G Ozorowski, J Pallesen, N de Val, D Lyumkis, CA Cottrell, JL Torres, ...
Nature 547 (7663), 360-363, 2017
2342017
Structural basis for the RNA-guided ribonuclease activity of CRISPR-Cas13d
C Zhang, S Konermann, NJ Brideau, P Lotfy, X Wu, SJ Novick, ...
Cell 175 (1), 212-223. e17, 2018
2132018
Modular assembly of the bacterial large ribosomal subunit
JH Davis, YZ Tan, B Carragher, CS Potter, D Lyumkis, JR Williamson
Cell 167 (6), 1610-1622. e15, 2016
2012016
Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome
DO Passos, M Li, R Yang, SV Rebensburg, R Ghirlando, Y Jeon, ...
Science 355 (6320), 89-92, 2017
1912017
Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy
AC Milazzo, A Cheng, A Moeller, D Lyumkis, E Jacovetty, J Polukas, ...
Journal of structural biology 176 (3), 404-408, 2011
1332011
Structural basis for translational surveillance by the large ribosomal subunit-associated protein quality control complex
D Lyumkis, D Oliveira dos Passos, EB Tahara, K Webb, EJ Bennett, ...
Proceedings of the National Academy of Sciences 111 (45), 15981-15986, 2014
1252014
Model building and refinement of a natively glycosylated HIV-1 Env protein by high-resolution cryoelectron microscopy
JH Lee, N De Val, D Lyumkis, AB Ward
Structure 23 (10), 1943-1951, 2015
1102015
Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function
A Ballandras-Colas, M Brown, NJ Cook, TG Dewdney, B Demeler, ...
Nature 530 (7590), 358-361, 2016
1062016
Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant
YZ Tan, S Aiyer, M Mietzsch, JA Hull, R McKenna, J Grieger, RJ Samulski, ...
Nature communications 9 (1), 3628, 2018
1052018
Structural basis for strand-transfer inhibitor binding to HIV intasomes
DO Passos, M Li, IK JóĽwik, XZ Zhao, D Santos-Martins, R Yang, SJ Smith, ...
Science 367 (6479), 810-814, 2020
832020
A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli
DG Sashital, CA Greeman, D Lyumkis, CS Potter, B Carragher, ...
Elife 3, e04491, 2014
752014
Structural Basis for the Activation of IKK1/α
S Polley, DO Passos, DB Huang, MC Mulero, A Mazumder, T Biswas, ...
Cell reports 17 (8), 1907-1914, 2016
542016
A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy
NR Voss, D Lyumkis, A Cheng, PW Lau, A Mulder, GC Lander, ...
Journal of structural biology 169 (3), 389-398, 2010
532010
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