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Elmar Pruesse
Elmar Pruesse
Adresă de e-mail confirmată pe njhealth.org - Pagina de pornire
Titlu
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
C Quast, E Pruesse, P Yilmaz, J Gerken, T Schweer, P Yarza, J Peplies, ...
Nucleic acids research 41 (D1), D590-D596, 2012
180632012
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
86902019
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
E Pruesse, C Quast, K Knittel, BM Fuchs, W Ludwig, J Peplies, ...
Nucleic acids research 35 (21), 7188-7196, 2007
61502007
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
A Klindworth, E Pruesse, T Schweer, J Peplies, C Quast, M Horn, ...
Nucleic acids research 41 (1), e1-e1, 2013
59902013
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes
E Pruesse, J Peplies, FO Glöckner
Bioinformatics 28 (14), 1823-1829, 2012
26632012
The SILVA and “all-species living tree project (LTP)” taxonomic frameworks
P Yilmaz, LW Parfrey, P Yarza, J Gerken, E Pruesse, C Quast, T Schweer, ...
Nucleic acids research 42 (D1), D643-D648, 2014
21722014
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
P Yarza, P Yilmaz, E Pruesse, FO Glöckner, W Ludwig, KH Schleifer, ...
Nature Reviews Microbiology 12 (9), 635-645, 2014
19282014
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ...
Nature biotechnology 29 (5), 415-420, 2011
6332011
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
6062018
Type 2 and interferon inflammation regulate SARS-CoV-2 entry factor expression in the airway epithelium
SP Sajuthi, P DeFord, Y Li, ND Jackson, MT Montgomery, JL Everman, ...
Nature communications 11 (1), 5139, 2020
166*2020
phyloFlash: rapid small-subunit rRNA profiling and targeted assembly from metagenomes
HR Gruber-Vodicka, BKB Seah, E Pruesse
Msystems 5 (5), e00920-20, 2020
1462020
ARB: a software environment for sequence data
R Westram, K Bader, E Prüsse, Y Kumar, H Meier, FO Glöckner, ...
Handbook of Molecular Microbial Ecology I, 399-406, 2011
872011
Bioconda: Sustainable and comprehensive software distribution for the life sciences
R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ...
Nature Methods 15 (7), 475-476, 2018
342018
Analysis of 23S rRNA genes in metagenomes–a case study from the Global Ocean Sampling Expedition
P Yilmaz, R Kottmann, E Pruesse, C Quast, FO Glöckner
Systematic and applied microbiology 34 (6), 462-469, 2011
272011
SILVA databases
C Quast, E Pruesse, J Gerken, T Schweer, P Yilmaz, J Peplies, ...
Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes: Basics …, 2015
112015
SILVA: comprehensive databases for quality checked and aligned ribosomal RNA sequence data compatible with ARB
E Pruesse, C Quast, P Yilmaz, W Ludwig, FO Glöckner
Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary …, 2011
102011
Heterogeneity in Clinically and Molecularly Defined Airway Type 2 Inflammation Among Children with Exacerbation-Prone Asthma
KC Goldfarbmuren, CM Moore, GL Zinnen, A Fairbanks-Mahnke, ...
B101. VARIED OMICS TECHNIQUES APPLIED TO ALLERGIC AND RESPIRATORY TRAITS …, 2022
2022
Scalable bioinformatic methods and resources for ribosomal RNA gene based studies
E Prüsse
Jacobs University Bremen, 2011
2011
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