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John H Morris
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STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ...
Nucleic acids research 47 (D1), D607-D613, 2019
96952019
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research, gkw937, 2016
58302016
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
25422007
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
TD Goddard, CC Huang, EC Meng, EF Pettersen, GS Couch, JH Morris, ...
Protein Science 27 (1), 14-25, 2018
21932018
UCSF ChimeraX: Structure visualization for researchers, educators, and developers
EF Pettersen, TD Goddard, CC Huang, EC Meng, GS Couch, TI Croll, ...
Protein Science 30 (1), 70-82, 2021
16952021
Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing
BW Kunkle, B Grenier-Boley, R Sims, JC Bis, V Damotte, AC Naj, ...
Nature genetics 51 (3), 414-430, 2019
14202019
Cytoscape StringApp: network analysis and visualization of proteomics data
NT Doncheva, JH Morris, J Gorodkin, LJ Jensen
Journal of proteome research 18 (2), 623-632, 2018
8522018
Biological network exploration with Cytoscape 3
G Su, JH Morris, B Demchak, GD Bader
Current protocols in bioinformatics 47 (1), 8.13. 1-8.13. 24, 2014
7562014
Global landscape of HIV–human protein complexes
S Jaeger, P Cimermancic, N Gulbahce, JR Johnson, KE McGovern, ...
Nature 481 (7381), 365-370, 2012
7112012
Cytoscape automation: empowering workflow-based network analysis
D Otasek, JH Morris, J Boušas, AR Pico, B Demchak
Genome biology 20 (1), 1-15, 2019
6152019
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
JH Morris, L Apeltsin, AM Newman, J Baumbach, T Wittkop, G Su, ...
BMC bioinformatics 12 (1), 1-14, 2011
4942011
Using sequence similarity networks for visualization of relationships across diverse protein superfamilies
HJ Atkinson, JH Morris, TE Ferrin, PC Babbitt
PloS one 4 (2), e4345, 2009
4092009
GLay: community structure analysis of biological networks
G Su, A Kuchinsky, JH Morris, DJ States, F Meng
Bioinformatics 26 (24), 3135-3137, 2010
2332010
The structure–function linkage database
E Akiva, S Brown, DE Almonacid, AE Barber 2nd, AF Custer, MA Hicks, ...
Nucleic acids research 42 (D1), D521-D530, 2014
2122014
Leveraging enzyme structure− function relationships for functional inference and experimental design: the structure− function linkage database
SCH Pegg, SD Brown, S Ojha, J Seffernick, EC Meng, JH Morris, ...
Biochemistry 45 (8), 2545-2555, 2006
1932006
Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions
JH Morris, GM Knudsen, E Verschueren, JR Johnson, P Cimermancic, ...
Nature protocols 9 (11), 2539-2554, 2014
1752014
Cytokine profile and prognostic significance of high neutrophil-lymphocyte ratio in colorectal cancer
ZY Chen, K Raghav, CH Lieu, ZQ Jiang, C Eng, JN Vauthey, GJ Chang, ...
British journal of cancer 112 (6), 1088-1097, 2015
1502015
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse
AS Nord, PJ Chang, BR Conklin, AV Cox, CA Harper, GG Hicks, ...
Nucleic acids research 34 (suppl_1), D642-D648, 2006
1472006
From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II
H Braberg, H Jin, EA Moehle, YA Chan, S Wang, M Shales, JJ Benschop, ...
Cell 154 (4), 775-788, 2013
1412013
Partitioning biological data with transitivity clustering
T Wittkop, D Emig, S Lange, S Rahmann, M Albrecht, JH Morris, S B÷cker, ...
Nature methods 7 (6), 419-420, 2010
1282010
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Articles 1–20