Follow
Juliane Perner
Juliane Perner
Computational biologist, Novartis Institutes for BioMedical Research (NIBR)
Verified email at novartis.com
Title
Cited by
Cited by
Year
Organoid cultures recapitulate esophageal adenocarcinoma heterogeneity providing a model for clonality studies and precision therapeutics
X Li, HE Francies, M Secrier, J Perner, A Miremadi, N Galeano-Dalmau, ...
Nature communications 9 (1), 1-13, 2018
1872018
The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic
AM Frankell, S Jammula, X Li, G Contino, S Killcoyne, S Abbas, J Perner, ...
Nature genetics 51 (3), 506-516, 2019
1312019
Prediction of human population responses to toxic compounds by a collaborative competition
F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ...
Nature biotechnology 33 (9), 933, 2015
1112015
Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils
L Grassi, F Pourfarzad, S Ullrich, A Merkel, F Were, ...
Cell reports 24 (10), 2784-2794, 2018
752018
Identification of Prognostic Phenotypes of Esophageal Adenocarcinoma in 2 Independent Cohorts
T Sawas, S Killcoyne, PG Iyer, KK Wang, TC Smyrk, JB Kisiel, Y Qin, ...
Gastroenterology 155 (6), 1720-1728. e4, 2018
592018
Epigenomic co-localization and co-evolution reveal a key role for 5hmC as a communication hub in the chromatin network of ESCs
D Juan, J Perner, EC de Santa Pau, S Marsili, D Ochoa, HR Chung, ...
Cell reports 14 (5), 1246-1257, 2016
532016
Identification of subtypes of Barrett’s Esophagus and esophageal adenocarcinoma based on DNA methylation profiles and integration of transcriptome and Genome Data
SG Jammula, AC Katz-Summercorn, X Li, C Linossi, E Smyth, S Killcoyne, ...
Gastroenterology 158 (6), 1682-1697. e1, 2020
492020
Selection and Application of Tissue microRNAs for Nonendoscopic Diagnosis of Barrett’s Esophagus
X Li, S Kleeman, SB Coburn, C Fumagalli, J Perner, S Jammula, ...
Gastroenterology 155 (3), 771-783. e3, 2018
342018
Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling
J Perner, J Lasserre, S Kinkley, M Vingron, HR Chung
Nucleic acids research 42 (22), 13689-13695, 2014
312014
Patient-specific cancer genes contribute to recurrently perturbed pathways and establish therapeutic vulnerabilities in esophageal adenocarcinoma
TP Mourikis, L Benedetti, E Foxall, D Temelkovski, J Nulsen, J Perner, ...
Nature communications 10 (1), 1-17, 2019
272019
Immune activation by DNA damage predicts response to chemotherapy and survival in oesophageal adenocarcinoma
RC Turkington, LA Knight, JK Blayney, M Secrier, R Douglas, EE Parkes, ...
Gut 68 (11), 1918-1927, 2019
232019
Impact of mutations in Toll-like receptor pathway genes on esophageal carcinogenesis
DR Fels Elliott, J Perner, X Li, MF Symmons, B Verstak, M Eldridge, ...
PLoS genetics 13 (5), e1006808, 2017
232017
Transcriptomic profiling reveals three molecular phenotypes of adenocarcinoma at the gastroesophageal junction
J Bornschein, L Wernisch, M Secrier, A Miremadi, J Perner, S MacRae, ...
International journal of cancer 145 (12), 3389-3401, 2019
202019
Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic
AM Frankell, S Jammula, X Li, G Contino, S Killcoyne, S Abbas, J Perner, ...
Nature Genetics 51, 506-516, 2019
152019
Epigenetic regulation of Amphiregulin and Epiregulin in colorectal cancer
F Bormann, S Stinzing, S Tierling, M Morkel, MR Markelova, J Walter, ...
International journal of cancer 144 (3), 569-581, 2019
132019
Drug-induced chromatin accessibility changes associate with sensitivity to liver tumor promotion
A Vitobello, J Perner, J Beil, J Zhu, A Del Río-Espínola, L Morawiec, ...
Life science alliance 2 (5), 2019
72019
Chromatin signaling and transcription initiation
J Perner, HR Chung
Frontiers in Life Science 7 (1-2), 22-30, 2013
62013
Characterizing cell types through differentially expressed gene clusters using a model-based approach
J Perner, E Zotenko
Industrial Conference on Data Mining, 106-120, 2011
62011
The mutREAD method detects mutational signatures from low quantities of cancer DNA
J Perner, S Abbas, K Nowicki-Osuch, G Devonshire, MD Eldridge, ...
Nature Communications 11 (1), 1-7, 2020
52020
Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma
TP Mourikis, L Benedetti, E Foxall, D Temelkovski, J Nulsen, J Perner, ...
bioRxiv, 321612, 2018
22018
The system can't perform the operation now. Try again later.
Articles 1–20