Francisco S. Domingues
Francisco S. Domingues
Institute for Biomedicine, Eurac research, Bolzano
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A new measure for functional similarity of gene products based on Gene Ontology
A Schlicker, FS Domingues, J Rahnenführer, T Lengauer
BMC bioinformatics 7 (1), 302, 2006
Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility
A Franke, T Balschun, TH Karlsen, J Sventoraityte, S Nikolaus, G Mayr, ...
Nature genetics 40 (11), 1319-1323, 2008
Topological analysis and interactive visualization of biological networks and protein structures
NT Doncheva, Y Assenov, FS Domingues, M Albrecht
Nature Protocols 7 (4), 670-685, 2012
Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus–infected patients
S Susser, C Welsch, Y Wang, M Zettler, FS Domingues, U Karey, ...
Hepatology 50 (6), 1709-1718, 2009
Seventy-five genetic loci influencing the human red blood cell
P van der Harst, W Zhang, IM Leach, A Rendon, N Verweij, J Sehmi, ...
Nature 492 (7429), 369-375, 2012
Analyzing and visualizing residue networks of protein structures
NT Doncheva, K Klein, FS Domingues, M Albrecht
Trends in biochemical sciences, 2011
Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho-and Sphingolipid Concentrations
A Demirkan, CM van Duijn, P Ugocsai, A Isaacs, PP Pramstaller, ...
PLoS Genetics 8 (2), e1002490, 2012
NOXclass: prediction of protein-protein interaction types
H Zhu, F Domingues, I Sommer, T Lengauer
BMC bioinformatics 7 (1), 27, 2006
Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
T Sing, AJ Low, N Beerenwinkel, O Sander, PK Cheung, FS Domingues, ...
Antiviral therapy 12 (7), 1097, 2007
Calculating the statistical significance of changes in pathway activity from gene expression data
J Rahnenführer, FS Domingues, J Maydt, T Lengauer
Statistical Applications in Genetics and Molecular Biology 3 (1), 1-29, 2004
ProSup: a refined tool for protein structure alignment
P Lackner, WA Koppensteiner, MJ Sippl, FS Domingues
Protein Engineering 13 (11), 745-752, 2000
Structure-derived substitution matrices for alignment of distantly related sequences
A Prliæ, FS Domingues, MJ Sippl
Protein Engineering 13 (8), 545-550, 2000
Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage
O Sander, T Sing, I Sommer, AJ Low, PK Cheung, PR Harrigan, ...
PLoS computational biology 3 (3), e58, 2007
Overexpression of blood microRNAs 103a, 30b, and 29a in l-dopa–treated patients with PD
A Serafin, L Foco, S Zanigni, H Blankenburg, A Picard, A Zanon, ...
Neurology 84 (7), 645-653, 2015
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy
FS Domingues, P Lackner, A Andreeva, MJ Sippl
Journal of molecular biology 297 (4), 1003-1013, 2000
Comparative analysis of protein structure alignments
G Mayr, F Domingues, P Lackner
BMC Structural Biology 7 (1), 50, 2007
Molecular basis of telaprevir resistance due to V36 and T54 mutations in the NS3-4A protease of the hepatitis C virus
C Welsch, FS Domingues, S Susser, I Antes, C Hartmann, G Mayr, ...
Genome biology 9 (1), R16, 2008
Assessment of the CASP4 fold recognition category
MJ Sippl, P Lackner, FS Domingues, A Prliæ, R Malik, A Andreeva, ...
Proteins: Structure, Function, and Bioinformatics 45 (S5), 55-67, 2001
Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2
M Albrecht, FS Domingues, S Schreiber, T Lengauer
FEBS letters 554 (3), 520-528, 2003
Identification of HNRNPK as Regulator of Hepatitis C Virus Particle Production
M Poenisch, P Metz, H Blankenburg, A Ruggieri, JY Lee, D Rupp, ...
PLoS pathogens 11 (1), e1004573, 2015
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