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David J Clark
David J Clark
Verified email at astrazeneca.com
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Year
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
2892019
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ...
Nature protocols 13 (7), 1632-1661, 2018
2752018
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
2722020
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
2022020
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer cell 39 (4), 509-528. e20, 2021
1892021
Proteomic profiling of cell envelope‐associated proteins from Staphylococcus aureus
CL Gatlin, R Pieper, ST Huang, E Mongodin, E Gebregeorgis, PP Parmar, ...
Proteomics 6 (5), 1530-1549, 2006
1272006
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ...
Cancer Cell, 0
126
Triple SILAC quantitative proteomic analysis reveals differential abundance of cell signaling proteins between normal and lung cancer-derived exosomes
DJ Clark, WE Fondrie, A Yang, L Mao
Journal of proteomics 133, 161-169, 2016
1212016
Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity
KE Funk, SN Thomas, KN Schafer, GL Cooper, Z Liao, DJ Clark, AJ Yang, ...
Biochemical Journal 462 (1), 77-88, 2014
1162014
Novel dimensions of piRNAs in cancer
Y Mei, D Clark, L Mao
Cancer letters 336 (1), 46-52, 2013
1142013
Proteogenomic characterization of pancreatic ductal adenocarcinoma
L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ...
Cell 184 (19), 5031-5052. e26, 2021
1042021
Temperature and growth phase influence the outer-membrane proteome and the expression of a type VI secretion system in Yersinia pestis
R Pieper, ST Huang, JM Robinson, DJ Clark, H Alami, PP Parmar, ...
Microbiology 155 (2), 498-512, 2009
992009
Comparative proteomic analysis of Staphylococcus aureus strains with differences in resistance to the cell wall‐targeting antibiotic vancomycin
R Pieper, CL Gatlin‐Bunai, EF Mongodin, PP Parmar, ST Huang, ...
Proteomics 6 (15), 4246-4258, 2006
972006
A piRNA-like small RNA interacts with and modulates p-ERM proteins in human somatic cells
Y Mei, Y Wang, P Kumari, AC Shetty, D Clark, T Gable, AD MacKerell, ...
Nature communications 6 (1), 7316, 2015
862015
Plasma membrane proteomics of tumor spheres identify CD166 as a novel marker for cancer stem-like cells in head and neck squamous cell carcinoma
M Yan, X Yang, L Wang, D Clark, H Zuo, D Ye, W Chen, P Zhang
Molecular & Cellular Proteomics 12 (11), 3271-3284, 2013
822013
Redefining the Breast Cancer Exosome Proteome by Tandem Mass Tag Quantitative Proteomics and Multivariate Cluster Analysis
DJ Clark, WE Fondrie, Z Liao, PI Hanson, A Fulton, L Mao, AJ Yang
Analytical chemistry 87 (20), 10462-10469, 2015
712015
Cancer biomarker discovery: lectin-based strategies targeting glycoproteins
D Clark, L Mao
Disease markers 33 (1), 1-10, 2012
642012
Site-specific fucosylation analysis identifying glycoproteins associated with aggressive prostate cancer cell lines using tandem affinity enrichments of intact glycopeptides …
J Zhou, W Yang, Y Hu, N Hoti, Y Liu, P Shah, S Sun, D Clark, S Thomas, ...
Analytical chemistry 89 (14), 7623-7630, 2017
622017
Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma
Y Hu, J Pan, P Shah, M Ao, SN Thomas, Y Liu, L Chen, M Schnaubelt, ...
Cell Reports 33 (3), 108276, 2020
572020
Reanalysis of global proteomic and phosphoproteomic data identified a large number of glycopeptides
Y Hu, P Shah, DJ Clark, M Ao, H Zhang
Analytical chemistry 90 (13), 8065-8071, 2018
552018
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Articles 1–20