Mohamed Nadhir Djekidel
Mohamed Nadhir Djekidel
Sidra Medicine
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eccDNAs are apoptotic products with high innate immunostimulatory activity
Y Wang, M Wang, MN Djekidel, H Chen, D Liu, FW Alt, Y Zhang
Nature 599 (7884), 308-314, 2021
Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction
A Bhattacherjee, MN Djekidel, R Chen, W Chen, LM Tuesta, Y Zhang
Nature communications 10 (1), 4169, 2019
Decoding molecular and cellular heterogeneity of mouse nucleus accumbens
R Chen, TR Blosser, MN Djekidel, J Hao, A Bhattacherjee, W Chen, ...
Nature neuroscience 24 (12), 1757-1771, 2021
Distinct dynamics and functions of H2AK119ub1 and H3K27me3 in mouse preimplantation embryos
Z Chen, MN Djekidel, Y Zhang
Nature Genetics 53 (4), 551-563, 2021
Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells
X Fu, X Wu, MN Djekidel, Y Zhang
Nature cell biology 21 (7), 835-844, 2019
BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions
Z Liang, G Li, Z Wang, MN Djekidel, Y Li, MP Qian, MQ Zhang, Y Chen
Nature communications 8 (1), 1622, 2017
FIND: difFerential chromatin INteractions Detection using a spatial Poisson process
MN Djekidel, Y Chen, MQ Zhang
Genome research 28 (3), 412-422, 2018
uwot: The uniform manifold approximation and projection (UMAP) method for dimensionality reduction
J Melville, A Lun, MN Djekidel, Y Hao
R package version 0.1 10, 2020
A transcriptional roadmap for 2C-like–to–pluripotent state transition
X Fu, MN Djekidel, Y Zhang
Science advances 6 (22), eaay5181, 2020
Acute depletion of CTCF rewires genome-wide chromatin accessibility
B Xu, H Wang, S Wright, J Hyle, Y Zhang, Y Shao, M Niu, Y Fan, ...
Genome Biology 22 (1), 244, 2021
Reprogramming of chromatin accessibility in somatic cell nuclear transfer is DNA replication independent
MN Djekidel, A Inoue, S Matoba, T Suzuki, C Zhang, F Lu, L Jiang, ...
Cell reports 23 (7), 1939-1947, 2018
Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation
Y Li, Y He, Z Liang, Y Wang, F Chen, MN Djekidel, G Li, X Zhang, S Xiang, ...
Cell death & disease 9 (2), 200, 2018
3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process
MN Djekidel, Z Liang, Q Wang, Z Hu, G Li, Y Chen, MQ Zhang
Genome biology 16, 1-16, 2015
Uwot: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction. R Package Version 0.1. 10
J Melville, A Lun, M Djekidel, Y Hao
CRAN, 2020
HiC‐3DViewer: a new tool to visualize Hi‐C data in 3D space
MN Djekidel, M Wang, MQ Zhang, J Gao
Quantitative Biology 5 (2), 183-190, 2017
Cell type–specific mechanism of Setd1a heterozygosity in schizophrenia pathogenesis
R Chen, Y Liu, MN Djekidel, W Chen, A Bhattacherjee, Z Chen, ...
Science Advances 8 (9), eabm1077, 2022
Developing bioimaging and quantitative methods to study 3D genome
J Gao, X Yang, M Nadhir Djekidel, Y Wang, P Xi, MQ Zhang
Quantitative Biology 4 (2), 129-147, 2016
uwot: The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction (2020)
J Melville, A Lun, MN Djekidel, Y Hao
URL https://CRAN. R-project. org/package= uwot, 0
Spatial transcriptomics reveals the distinct organization of mouse prefrontal cortex and neuronal subtypes regulating chronic pain
A Bhattacherjee, C Zhang, BR Watson, MN Djekidel, JR Moffitt, Y Zhang
Nature Neuroscience 26 (11), 1880-1893, 2023
Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation
J Hyle, MN Djekidel, J Williams, S Wright, Y Shao, B Xu, C Li
Genome Biology 24 (1), 14, 2023
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