| Lateral gene transfer and the origins of prokaryotic groups Y Boucher, CJ Douady, RT Papke, DA Walsh, MER Boudreau, CL Nesbø, ... Annual review of genetics 37 (1), 283-328, 2003 | 529 | 2003 |
| Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones DA Walsh, E Zaikova, CG Howes, YC Song, JJ Wright, SG Tringe, ... Science 326 (5952), 578-582, 2009 | 347 | 2009 |
| The genome of Salinibacter ruber: Convergence and gene exchange among hyperhalophilic bacteria and archaea EF Mongodin, KE Nelson, S Daugherty, RT Deboy, J Wister, H Khouri, ... Proceedings of the National Academy of Sciences 102 (50), 18147-18152, 2005 | 347 | 2005 |
| Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia E Zaikova, DA Walsh, CP Stilwell, WW Mohn, PD Tortell, SJ Hallam Environmental microbiology 12 (1), 172-191, 2010 | 234 | 2010 |
| Giant virus diversity and host interactions through global metagenomics F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ... Nature 578 (7795), 432-436, 2020 | 216 | 2020 |
| Archaeal diversity along a soil salinity gradient prone to disturbance DA Walsh, RT Papke, WF Doolittle Environmental Microbiology 7 (10), 1655-1666, 2005 | 140 | 2005 |
| Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations E Capo, C Giguet-Covex, A Rouillard, K Nota, PD Heintzman, A Vuillemin, ... Quaternary 4 (1), 6, 2021 | 115 | 2021 |
| Metaproteomic analysis of a winter to spring succession in coastal northwest Atlantic Ocean microbial plankton AA Georges, H El-Swais, SE Craig, WKW Li, DA Walsh The ISME journal 8 (6), 1301-1313, 2014 | 93 | 2014 |
| Linking metagenomics to aquatic microbial ecology and biogeochemical cycles HP Grossart, R Massana, KD McMahon, DA Walsh Limnology and Oceanography 65, S2-S20, 2020 | 91 | 2020 |
| Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria D Colatriano, PQ Tran, C Guéguen, WJ Williams, C Lovejoy, DA Walsh Communications biology 1 (1), 90, 2018 | 90 | 2018 |
| Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages K Kieft, Z Zhou, RE Anderson, A Buchan, BJ Campbell, SJ Hallam, ... Nature communications 12 (1), 3503, 2021 | 86 | 2021 |
| Expansion of the global RNA virome reveals diverse clades of bacteriophages U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ... Cell 185 (21), 4023-4037. e18, 2022 | 85 | 2022 |
| Evolution of rhodopsin ion pumps in haloarchaea AK Sharma, DA Walsh, E Bapteste, F Rodriguez-Valera, W Ford Doolittle, ... BMC evolutionary biology 7, 1-13, 2007 | 73 | 2007 |
| The NSERC Canadian Lake Pulse Network: A national assessment of lake health providing science for water management in a changing climate Y Huot, CA Brown, G Potvin, D Antoniades, HM Baulch, BE Beisner, ... Science of The Total Environment 695, 133668, 2019 | 72 | 2019 |
| Evolution of the RNA Polymerase B′ Subunit Gene (rpoB′) in Halobacteriales: a Complementary Molecular Marker to the SSU rRNA Gene DA Walsh, E Bapteste, M Kamekura, WF Doolittle Molecular biology and evolution 21 (12), 2340-2351, 2004 | 72 | 2004 |
| Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes P Tran, A Ramachandran, O Khawasik, BE Beisner, M Rautio, Y Huot, ... Environmental microbiology 20 (7), 2568-2584, 2018 | 67 | 2018 |
| Progress and challenges in ocean metaproteomics and proposed best practices for data sharing MA Saito, EM Bertrand, ME Duffy, DA Gaylord, NA Held, WJ Hervey IV, ... Journal of proteome research 18 (4), 1461-1476, 2019 | 64 | 2019 |
| DNA extraction from 0.22 μM Sterivex filters and cesium chloride density gradient centrifugation JJ Wright, S Lee, E Zaikova, DA Walsh, SJ Hallam JoVE (Journal of Visualized Experiments), e1352, 2009 | 64 | 2009 |
| Interactions of RadB, a DNA repair protein in archaea, with DNA and ATP CP Guy, S Haldenby, A Brindley, DA Walsh, GS Briggs, MJ Warren, ... Journal of Molecular Biology 358 (1), 46-56, 2006 | 60 | 2006 |
| Diversity, evolution, and classification of virophages uncovered through global metagenomics D Paez-Espino, J Zhou, S Roux, S Nayfach, GA Pavlopoulos, F Schulz, ... Microbiome 7, 1-14, 2019 | 54 | 2019 |
