Eduardo Castro-Nallar

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Keith A. CrandallComputational Biology Institute, Department of Biostatistics & Bioinformatics, George WashingtonVerified email at gwu.edu
Marcos Pérez-LosadaAssociate Professor, Computational Biology Institute, Department of Biostatistics and BioinformaticsVerified email at gwu.edu
W. Evan JohnsonProfessor of MedicineVerified email at rutgers.edu
Claudio MenesesFac. de Agronomía Sist. Naturales/ Fac. de Cs. Biológicas/ Pontificia Universidad Católica de ChileVerified email at uc.cl
Robert J. Freishtat, MD, MPHPresident, Uncommon CuresVerified email at uncommoncures.com
Solaiappan ManimaranBoston UniversityVerified email at bu.edu
Juan Castro-SeverynFONDECYT Postdoctoral researcher at Universidad Catolica del NorteVerified email at ucn.cl
Coral Pardo EstéUniversidad Católica del NorteVerified email at ce.ucn.cl
Matthew L. BendallWeill Cornell Medicine, Division of Infectious DiseasesVerified email at gwu.edu
Francisco Remonsellez FuentesProfesor AsociadoVerified email at ucn.cl
Ian TomaAssociate Research Professor, George Washington UniversityVerified email at gwu.edu
Changjin HongNationwide Children's Hospital & Boston UniversityVerified email at nationwidechildrens.org
Sandro ValenzuelaUniversity of HelsinkiVerified email at helsinki.fi
Allyson ByrdGenentechVerified email at gene.com
Agustina UndabarrenaUniversidad Técnica Federico Santa MaríaVerified email at usm.cl
Cristóbal Galbán-MalagónCentro de Genómica, Ecología y Medio Ambiente (GEMA), Universidad Mayor; Center For EnvironmentVerified email at umayor.cl
Ignacio Poblete-CastroDepartment of Chemical and Bioprocess Engineering, Universidad de Santiago de ChileVerified email at usach.cl
Niranjan NagarajanSenior Group Leader, Genome Institute of SingaporeVerified email at gis.a-star.edu.sg
Christopher MasonProfessor of Genomics, Physiology, & Biophysics, Weill Cornell MedicineVerified email at med.cornell.edu
Matthieu Joseph MiossecSenior Bioinformatician, Wellcome Centre for Human Genetics, University of OxfordVerified email at well.ox.ac.uk

Eduardo Castro-Nallar

Universidad de Talca

Verified email at utalca.cl - Homepage

ecology evolution genomics


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Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls E Castro-Nallar, ML Bendall, M Pérez-Losada, S Sabuncyan, ... PeerJ 3, e1140, 2015	245	2015
Pathogen typing in the genomics era: MLST and the future of molecular epidemiology M Pérez-Losada, P Cabezas, E Castro-Nallar, KA Crandall Infection, Genetics and Evolution 16, 38-53, 2013	218	2013
PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples C Hong, S Manimaran, Y Shen, JF Perez-Rogers, AL Byrd, ... Microbiome 2 (1), 1-15, 2014	194	2014
A global metagenomic map of urban microbiomes and antimicrobial resistance D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ... Cell 184 (13), 3376-3393. e17, 2021	165	2021
Pathoscope: species identification and strain attribution with unassembled sequencing data OE Francis, M Bendall, S Manimaran, C Hong, NL Clement, ... Genome research 23 (10), 1721-1729, 2013	146	2013
The evolution of HIV: inferences using phylogenetics E Castro-Nallar, M Pérez-Losada, GF Burton, KA Crandall Molecular phylogenetics and evolution 62 (2), 777-792, 2012	133	2012
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment Nature Medicine, 1-11, 2020	129*	2020
Dual transcriptomic profiling of host and microbiota during health and disease in pediatric asthma M Pérez-Losada, E Castro-Nallar, ML Bendall, RJ Freishtat, KA Crandall PloS one 10 (6), e0131819, 2015	113	2015
Metataxonomic and metagenomic approaches vs. culture-based techniques for clinical pathology SK Hilton, E Castro-Nallar, M Pérez-Losada, I Toma, TA McCaffrey, ... Frontiers in microbiology 7, 484, 2016	103	2016
Phage cluster relationships identified through single gene analysis KC Smith, E Castro-Nallar, JNB Fisher, DP Breakwell, JH Grose, ... Bmc Genomics 14 (1), 1-16, 2013	70	2013
Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities E Castro-Nallar, Y Shen, RJ Freishtat, M Pérez-Losada, S Manimaran, ... BMC medical genomics 8 (1), 1-9, 2015	68	2015
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data AL Byrd, JF Perez-Rogers, S Manimaran, E Castro-Nallar, I Toma, ... BMC bioinformatics 15 (1), 1-14, 2014	68	2014
Single-molecule long-read 16S sequencing to characterize the lung microbiome from mechanically ventilated patients with suspected pneumonia I Toma, MO Siegel, J Keiser, A Yakovleva, A Kim, L Davenport, J Devaney, ... Journal of clinical microbiology 52 (11), 3913-3921, 2014	64	2014
COVID-19 drug practices risk antimicrobial resistance evolution E Afshinnekoo, C Bhattacharya, A Burguete-García, E Castro-Nallar, ... The Lancet Microbe 2 (4), e135-e136, 2021	61	2021
Cyclic AMP regulates bacterial persistence through repression of the oxidative stress response and SOS-dependent DNA repair in uropathogenic Escherichia coli RC Molina-Quiroz, C Silva-Valenzuela, J Brewster, E Castro-Nallar, ... MBio 9 (1), 10.1128/mbio. 02144-17, 2018	61	2018
Redefining healthy urine: a cross-sectional exploratory metagenomic study of people with and without bladder dysfunction SL Groah, M Pérez-Losada, L Caldovic, IH Ljungberg, BM Sprague, ... The Journal of urology 196 (2), 579-587, 2016	61	2016
Microbial sequence typing in the genomic era M Pérez-Losada, M Arenas, E Castro-Nallar Infection, Genetics and Evolution 63, 346-359, 2018	58	2018
Monitoring the occurrence of microplastic ingestion in Otariids along the Peruvian and Chilean coasts DJ Perez-Venegas, C Toro-Valdivieso, F Ayala, B Brito, L Iturra, ... Marine Pollution Bulletin 153, 110966, 2020	54	2020
Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage E Castro-Nallar, H Chen, S Gladman, SC Moore, T Seemann, IB Powell, ... Genome biology and evolution 4 (3), 382-393, 2012	47	2012
In-Depth Genomic and Phenotypic Characterization of the Antarctic Psychrotolerant Strain Pseudomonas sp. MPC6 Reveals Unique Metabolic Features, Plasticity … M Orellana-Saez, N Pacheco, JI Costa, KN Mendez, MJ Miossec, ... Frontiers in Microbiology 10, 1154, 2019	41	2019

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