David Berry
David Berry
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Cited by
Cited by
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
D Berry, S Widder
Frontiers in Microbiology 5, 219, 2014
High-fat diet alters gut microbiota physiology in mice
H Daniel, AM Gholami, D Berry, C Desmarchelier, H Hahne, G Loh, ...
The ISME journal 8 (2), 295-308, 2014
Barcoded primers used in multiplex amplicon pyrosequencing bias amplification
D Berry, KB Mahfoudh, M Wagner, A Loy
Applied and environmental microbiology 77 (21), 7846-7849, 2011
Microbial ecology of drinking water distribution systems
D Berry, C Xi, L Raskin
Current opinion in biotechnology 17 (3), 297-302, 2006
Temporal bacterial community dynamics vary among ulcerative colitis patients after fecal microbiota transplantation
S Angelberger, W Reinisch, A Makristathis, C Lichtenberger, C Dejaco, ...
Official journal of the American College of Gastroenterology| ACG 108 (10 …, 2013
Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations
A Riva, F Borgo, C Lassandro, E Verduci, G Morace, E Borghi, D Berry
Environmental microbiology 19 (1), 95-105, 2017
Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells
D Berry, E Mader, TK Lee, D Woebken, Y Wang, D Zhu, M Palatinszky, ...
Proceedings of the National Academy of Sciences 112 (2), E194-E203, 2015
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium
S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ...
Nature microbiology 2 (2), 1-12, 2016
NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite‐oxidizing Nitrospira
M Pester, F Maixner, D Berry, T Rattei, H Koch, S Lücker, B Nowka, ...
Environmental microbiology 16 (10), 3055-3071, 2014
Microbial nutrient niches in the gut
FC Pereira, D Berry
Environmental microbiology 19 (4), 1366-1378, 2017
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
D Berry, C Schwab, G Milinovich, J Reichert, K Ben Mahfoudh, T Decker, ...
The ISME journal 6 (11), 2091-2106, 2012
Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP
T Gutierrez, DR Singleton, D Berry, T Yang, MD Aitken, A Teske
The ISME journal 7 (11), 2091-2104, 2013
Cyanate as an energy source for nitrifiers
M Palatinszky, C Herbold, N Jehmlich, M Pogoda, P Han, M von Bergen, ...
Nature 524 (7563), 105-108, 2015
Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing
D Berry, B Stecher, A Schintlmeister, J Reichert, S Brugiroux, B Wild, ...
Proceedings of the National Academy of Sciences 110 (12), 4720-4725, 2013
Mucispirillum schaedleri antagonizes Salmonella virulence to protect mice against colitis
S Herp, S Brugiroux, D Garzetti, D Ring, LM Jochum, M Beutler, C Eberl, ...
Cell host & microbe 25 (5), 681-694. e8, 2019
An automated Raman-based platform for the sorting of live cells by functional properties
KS Lee, M Palatinszky, FC Pereira, J Nguyen, VI Fernandez, AJ Mueller, ...
Nature microbiology 4 (6), 1035-1048, 2019
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
C Schwab, D Berry, I Rauch, I Rennisch, J Ramesmayer, E Hainzl, ...
The ISME journal 8 (5), 1101-1114, 2014
Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
FC Pereira, K Wasmund, I Cobankovic, N Jehmlich, CW Herbold, KS Lee, ...
Nature communications 11 (1), 5104, 2020
Intestinal microbiota: a source of novel biomarkers in inflammatory bowel diseases?
D Berry, W Reinisch
Best practice & research Clinical gastroenterology 27 (1), 47-58, 2013
Role of bacterial exopolysaccharides (EPS) in the fate of the oil released during the Deepwater Horizon oil spill
T Gutierrez, D Berry, T Yang, S Mishamandani, L McKay, A Teske, ...
PloS one 8 (6), e67717, 2013
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