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Zhibin Ning
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Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux
Q Wang, Y Zhang, C Yang, H Xiong, Y Lin, J Yao, H Li, L Xie, W Zhao, ...
Science 327 (5968), 1004-1007, 2010
11092010
MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain
M Somel, S Guo, N Fu, Z Yan, HY Hu, Y Xu, Y Yuan, Z Ning, Y Hu, ...
Genome research 20 (9), 1207-1218, 2010
3422010
Widespread splicing changes in human brain development and aging
P Mazin, J Xiong, X Liu, Z Yan, X Zhang, M Li, L He, M Somel, Y Yuan, ...
Molecular systems biology 9 (1), 633, 2013
2332013
Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease
X Zhang, SA Deeke, Z Ning, AE Starr, J Butcher, J Li, J Mayne, K Cheng, ...
Nature communications 9 (1), 2873, 2018
2222018
MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota
X Zhang, Z Ning, J Mayne, JI Moore, J Li, J Butcher, SA Deeke, R Chen, ...
Microbiome 4, 1-12, 2016
1602016
Effect of Peptide-to-TiO2 Beads Ratio on Phosphopeptide Enrichment Selectivity
Q Li, Z Ning, J Tang, S Nie, R Zeng
Journal of proteome research 8 (11), 5375-5381, 2009
1432009
MetaLab: an automated pipeline for metaproteomic data analysis
K Cheng, Z Ning, X Zhang, L Li, B Liao, J Mayne, A Stintzi, D Figeys
Microbiome 5, 1-10, 2017
1102017
Rapid metabolic evolution in human prefrontal cortex
X Fu, P Giavalisco, X Liu, G Catchpole, N Fu, ZB Ning, S Guo, Z Yan, ...
Proceedings of the National Academy of Sciences 108 (15), 6181-6186, 2011
1042011
Assessing the impact of protein extraction methods for human gut metaproteomics
X Zhang, L Li, J Mayne, Z Ning, A Stintzi, D Figeys
Journal of proteomics 180, 120-127, 2018
1002018
An in vitro model maintaining taxon-specific functional activities of the gut microbiome
L Li, E Abou-Samra, Z Ning, X Zhang, J Mayne, J Wang, K Cheng, ...
Nature communications 10 (1), 4146, 2019
892019
Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease …
AE Starr, SA Deeke, Z Ning, CK Chiang, X Zhang, W Mottawea, ...
Gut 66 (9), 1573-1583, 2017
832017
High-coverage proteome analysis reveals the first insight of protein modification systems in the pathogenic spirochete Leptospira interrogans
XJ Cao, J Dai, H Xu, S Nie, X Chang, BY Hu, QH Sheng, LS Wang, ...
Cell research 20 (2), 197-210, 2010
822010
Bottom-up proteomics (2013–2015): keeping up in the era of systems biology
J Mayne, Z Ning, X Zhang, AE Starr, R Chen, S Deeke, CK Chiang, B Xu, ...
Analytical chemistry 88 (1), 95-121, 2016
772016
Deep metaproteomics approach for the study of human microbiomes
X Zhang, W Chen, Z Ning, J Mayne, D Mack, A Stintzi, R Tian, D Figeys
Analytical chemistry 89 (17), 9407-9415, 2017
762017
Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs
JP Gagné, C Ethier, D Defoy, S Bourassa, MF Langelier, AA Riccio, ...
DNA repair 30, 68-79, 2015
722015
The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes
CK Chiang, N Mehta, A Patel, P Zhang, Z Ning, J Mayne, WYL Sun, ...
PLoS genetics 10 (10), e1004695, 2014
712014
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging
YN Wei, HY Hu, GC Xie, N Fu, ZB Ning, R Zeng, P Khaitovich
Genome biology 16, 1-15, 2015
702015
RapidAIM: a culture-and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs
L Li, Z Ning, X Zhang, J Mayne, K Cheng, A Stintzi, D Figeys
Microbiome 8, 1-16, 2020
612020
Comprehensive profiling of phosphopeptides based on anion exchange followed by flow-through enrichment with titanium dioxide (AFET)
S Nie, J Dai, ZB Ning, XJ Cao, QH Sheng, R Zeng
Journal of proteome research 9 (9), 4585-4594, 2010
532010
Evaluating in vitro culture medium of gut microbiome with orthogonal experimental design and a metaproteomics approach
L Li, X Zhang, Z Ning, J Mayne, JI Moore, J Butcher, CK Chiang, D Mack, ...
Journal of proteome research 17 (1), 154-163, 2018
522018
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