Björn Usadel

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Anthony BolgerADAPT (Trinity College Dublin)Verified email at adaptcentre.ie
Marie BolgerForschungszentrum Jülich (Bioinformatik - IBG-4)Verified email at fz-juelich.de
Sonia OsorioInstituto de Hortofruticultura Subtropical y Mediterranea (IHSM), Universidad de Málaga-ConsejoVerified email at uma.es
Dirk SteinhauserSenior Scientific Expert, targenomix GmbHVerified email at targenomix.com
Maximilian Heinrich-Wilhelm SchmidtInstitut für Rebenzüchtung Hochschule GeisenheimVerified email at hs-gm.de
Federico GiorgiAssociate Professor, Department of Pharmacy and Biotechnology, University of Bologna, ItalyVerified email at unibo.it
Ronan SulpiceLecturer, School of Biological and Chemical Sciences, University of Galway, IrelandVerified email at universityofgalway.ie
Markus PaulyHeinrich-Heine University DuesseldorfVerified email at hhu.de
Ulrich SchurrForschungszentrum JülichVerified email at fz-juelich.de
Nese SreenivasuluPrincipal Scientist & Head -Grain Quality & Nutrition, International Rice Research InstituteVerified email at irri.org
Alisandra K. DentonValence Labs, QC, CanadaVerified email at hhu.de
Wolf ScheibleProfessor, Noble Research Institute LLCVerified email at noble.org
Uwe ScholzIPK Gatersleben, Seeland, GermanyVerified email at ipk-gatersleben.de
Cătălin VoiniciucAssociate Professor, Horticultural Sciences, University of FloridaVerified email at ufl.edu
Marek MutwilAssoc. Prof., School of Biological Sciences, Nanyang Technological UniversityVerified email at ntu.edu.sg
kristina grudennational institute of biologyVerified email at nib.si
Hendrik PoorterEcophysiologist, Wageningen University (WUR) / Research Center Jülich (FZJ)Verified email at wur.nl
Wolfram WeckwerthProfessor, Head of Department and Vienna Metabolomics Center (VIME) at the University of ViennaVerified email at univie.ac.at
waltraud x schulzeVerified email at uni-hohenheim.de

Björn Usadel

Professor of Biological Data Science,Heinrich-Heine-University Düsseldorf, Forschungszentrum Jülich

Verified email at fz-juelich.de - Homepage

Data Science Plant cell walls bioinformatics systems biology plant science


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Trimmomatic: a flexible trimmer for Illumina sequence data AM Bolger, M Lohse, B Usadel Bioinformatics 30 (15), 2114-2120, 2014	55481	2014
GMD@ CSB. DB: the Golm metabolome database J Kopka, N Schauer, S Krueger, C Birkemeyer, B Usadel, E Bergmüller, ... Bioinformatics 21 (8), 1635-1638, 2005	1547	2005
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics M Lohse, AM Bolger, A Nagel, AR Fernie, JE Lunn, M Stitt, B Usadel Nucleic acids research 40 (W1), W622-W627, 2012	920	2012
Sugars and circadian regulation make major contributions to the global regulation of diurnal gene expression in Arabidopsis OE Bläsing, Y Gibon, M Günther, M Höhne, R Morcuende, D Osuna, ... The Plant Cell 17 (12), 3257-3281, 2005	797	2005
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses B Usadel, A Nagel, O Thimm, H Redestig, OE Blaesing, N Palacios-Rojas, ... Plant physiology 138 (3), 1195-1204, 2005	667	2005
Genome‐wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus R Morcuende, R Bari, Y Gibon, W Zheng, BD PANT, O BLÄSING, ... Plant, Cell & Environment 30 (1), 85-112, 2007	618	2007
Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data M Lohse, A Nagel, T Herter, P May, M Schroda, R Zrenner, T Tohge, ... Plant, cell & environment 37 (5), 1250-1258, 2014	604	2014
A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize B Usadel, F Poree, A Nagel, M Lohse, A CZEDIK‐EYSENBERG, M Stitt Plant, cell & environment 32 (9), 1211-1229, 2009	600	2009
Starch as a major integrator in the regulation of plant growth R Sulpice, ET Pyl, H Ishihara, S Trenkamp, M Steinfath, H Witucka-Wall, ... Proceedings of the National Academy of Sciences 106 (25), 10348-10353, 2009	573	2009
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic … F Carrari, C Baxter, B Usadel, E Urbanczyk-Wochniak, MI Zanor, ... Plant Physiology 142 (4), 1380-1396, 2006	538	2006
Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats B USADEL, T OBAYASHI, M MUTWIL, FM GIORGI, GW BASSEL, ... Plant, Cell & Environment 32 (12), 1633-1651, 2009	528	2009
The genome of the stress-tolerant wild tomato species Solanum pennellii A Bolger, F Scossa, ME Bolger, C Lanz, F Maumus, T Tohge, ... Nature genetics 46 (9), 1034-1038, 2014	507	2014
Quantitation in mass-spectrometry-based proteomics WX Schulze, B Usadel Annual review of plant biology 61 (1), 491-516, 2010	411	2010
Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis G Doehlemann, R Wahl, RJ Horst, LM Voll, B Usadel, F Poree, M Stitt, ... The Plant Journal 56 (2), 181-195, 2008	410	2008
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato D Koenig, JM Jiménez-Gómez, S Kimura, D Fulop, DH Chitwood, ... Proceedings of the National Academy of Sciences 110 (28), E2655-E2662, 2013	401	2013
MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis R Schwacke, GY Ponce-Soto, K Krause, AM Bolger, B Arsova, A Hallab, ... Molecular plant 12 (6), 879-892, 2019	396	2019
Arabidopsis and primary photosynthetic metabolism–more than the icing on the cake M Stitt, J Lunn, B Usadel The Plant Journal 61 (6), 1067-1091, 2010	395	2010
Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants … S Osorio, R Alba, CMB Damasceno, G Lopez-Casado, M Lohse, MI Zanor, ... Plant physiology 157 (1), 405-425, 2011	379	2011
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments B Usadel, A Nagel, D Steinhauser, Y Gibon, OE Bläsing, H Redestig, ... BMC bioinformatics 7, 1-8, 2006	378	2006
Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes B Usadel, OE Bläsing, Y Gibon, K Retzlaff, M Höhne, M Günther, M Stitt Plant Physiology 146 (4), 1834-1861, 2008	370	2008

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