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Simon Kasif
Simon Kasif
Professor of Biomedical Engineering, Computer Science and Bioinformatics, Boston University
Adresă de e-mail confirmată pe bu.edu - Pagina de pornire
Titlu
Citat de
Citat de
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Initial sequencing and analysis of the human genome
US DOE Joint Genome Institute: Hawkins Trevor 4 Branscomb Elbert 4 Predki ...
nature 409 (6822), 860-921, 2001
305752001
Improved microbial gene identification with GLIMMER
AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
Nucleic acids research 27 (23), 4636-4641, 1999
29621999
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
JJ Faith, B Hayete, JT Thaden, I Mogno, J Wierzbowski, G Cottarel, ...
PLoS biology 5 (1), e8, 2007
18762007
Microbial gene identification using interpolated Markov models
SL Salzberg, AL Delcher, S Kasif, O White
Nucleic acids research 26 (2), 544-548, 1998
13481998
A system for induction of oblique decision trees
SK Murthy, S Kasif, S Salzberg
Journal of artificial intelligence research 2, 1-32, 1994
13091994
Alignment of whole genomes
AL Delcher, S Kasif, RD Fleischmann, J Peterson, O White, SL Salzberg
Nucleic acids research 27 (11), 2369-2376, 1999
12821999
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains
M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ...
PLoS genetics 4 (10), e1000242, 2008
11572008
Reconstructing and reprogramming the tumor-propagating potential of glioblastoma stem-like cells
ML Suvà, E Rheinbay, SM Gillespie, AP Patel, H Wakimoto, SD Rabkin, ...
Cell 157 (3), 580-594, 2014
9282014
Extracting conserved gene expression motifs from gene expression data
TM Murali, S Kasif
Biocomputing 2003, 77-88, 2002
5442002
Predicting protein function from protein/protein interaction data: a probabilistic approach
S Letovsky, S Kasif
Bioinformatics 19 (suppl_1), i197-i204, 2003
5062003
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ...
PloS one 7 (6), e37919, 2012
4752012
Whole-genome annotation by using evidence integration in functional-linkage networks
U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif
Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004
4132004
An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma
E Rheinbay, ML Suvà, SM Gillespie, H Wakimoto, AP Patel, M Shahid, ...
Cell reports 3 (5), 1567-1579, 2013
3182013
Erratum: Initial sequencing and analysis of the human genome: international human genome sequencing consortium (Nature (2001) 409 (860-921))
ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ...
Nature 412 (6846), 565-566, 2001
2752001
OC1: A randomized algorithm for building oblique decision trees
SK Murthy, S Kasif, S Salzberg, R Beigel
Proceedings of AAAI 93, 322-327, 1993
2591993
RankGene: identification of diagnostic genes based on expression data
Y Su, TM Murali, V Pavlovic, M Schaffer, S Kasif
Bioinformatics 19 (12), 1578-1579, 2003
2422003
Immediate-early and delayed primary response genes are distinct in function and genomic architecture
JW Tullai, ME Schaffer, S Mullenbrock, G Sholder, S Kasif, GM Cooper
Journal of Biological Chemistry 282 (33), 23981-23995, 2007
2372007
Induction of oblique decision trees
D Heath, S Kasif, S Salzberg
IJCAI 1993, 1002-1007, 1993
2361993
Network-based analysis of affected biological processes in type 2 diabetes models
M Liu, A Liberzon, SW Kong, WR Lai, PJ Park, IS Kohane, S Kasif
PLoS genetics 3 (6), e96, 2007
2262007
On the parallel complexity of discrete relaxation in constraint satisfaction networks
S Kasif
Artificial Intelligence 45 (3), 275-286, 1990
2141990
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