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Gherman Uritskiy
Gherman Uritskiy
Amazon Research
Adresă de e-mail confirmată pe jhu.edu - Pagina de pornire
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MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
GV Uritskiy, J DiRuggiero, J Taylor
Microbiome 6 (1), 158, 2018
11752018
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1822022
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ...
Nature biotechnology 40 (5), 711-719, 2022
1082022
Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert
G Uritskiy, S Getsin, A Munn, B Gomez-Silva, A Davila, B Glass, J Taylor, ...
The ISME Journal 13 (11), 2737-2749, 2019
652019
Applying genome-resolved metagenomics to deconvolute the halophilic microbiome
G Uritskiy, J DiRuggiero
Genes 10 (3), 220, 2019
322019
Cellular life from the three domains and viruses are transcriptionally active in a hypersaline desert community
G Uritskiy, MJ Tisza, DR Gelsinger, A Munn, J Taylor, J DiRuggiero
Environmental Microbiology 23 (7), 3401-3417, 2021
252021
Glycosylation and oligomeric state of envelope protein might influence HIV-1 virion capture by α4β7 integrin
S Chand, EL Messina, W AlSalmi, N Ananthaswamy, G Gao, G Uritskiy, ...
Virology 508, 199-212, 2017
212017
Generation and characterization of a bivalent protein boost for future clinical trials: HIV-1 subtypes CR01_AE and B gp120 antigens with a potent adjuvant
Y Wen, HV Trinh, CE Linton, C Tani, N Norais, DA Martinez-Guzman, ...
PLoS One 13 (4), e0194266, 2018
152018
Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing
DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ...
bioRxiv, 2021.05. 04.442591, 2021
132021
Regulatory noncoding small RNAs are diverse and abundant in an extremophilic microbial community
DR Gelsinger, G Uritskiy, R Reddy, A Munn, K Farney, J DiRuggiero
Msystems 5 (1), 10.1128/msystems. 00584-19, 2020
132020
Environmental factors driving spatial heterogeneity in desert halophile microbial communities
G Uritskiy, A Munn, M Dailey, DR Gelsinger, S Getsin, A Davila, ...
Frontiers in microbiology, 2571, 2020
122020
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up …
JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ...
Microbiome 6 (1), 1-10, 2018
102018
Humoral response to the HIV-1 envelope V2 region in a Thai early acute infection cohort
HV Trinh, N Gohain, PT Pham, C Hamlin, H Song, E Sanders-Buell, ...
Cells 8 (4), 365, 2019
92019
Current state of and future opportunities for prediction in microbiome research: report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019
E Sakowski, G Uritskiy, R Cooper, M Gomes, MR McLaren, JS Meisel, ...
Msystems 4 (5), e00392-19, 2019
82019
Accurate viral genome reconstruction and host assignment with proximity-ligation sequencing
G Uritskiy, M Press, C Sun, GD Huerta, AA Zayed, A Wiser, J Grove, ...
BioRxiv, 2021.06. 14.448389, 2021
72021
A genetic shift in an escaped transmitted/founder virus guides combinatorial vaccine design against HIV-1
S Jain, G Uritskiy, M Mahalingam, H Batra, S Chand, H Trinh, C Beck, ...
bioRxiv, 2021.06. 16.448593, 2021
32021
Microbial community adaptations and dynamics in extremophile microbiomes of the Atacama Desert
G Uritskiy
The Johns Hopkins University, 2020
12020
Resilience and adaptation mechanisms of an extremophile microbial com-munity following a catastrophic climate event
G Uritskiy, S Getsin, A Munn, B Gómez-Silva, A Davila33, B Glass, ...
bioRxiv, 2019
12019
A Remarkable Genetic Shift in a Transmitted/Founder Virus Broadens Antibody Responses Against HIV-1
S Jain, G Uritskiy, M Mahalingam, H Batra, S Chand, HV Trinh, C Beck, ...
eLife 13, 2024
2024
Stress responses of microbial communities from hypersaline environments
G Uritskiy, D Gelsinger, A Munn, S Getsin, J DiRuggiero
Biophysical Journal 121 (3), 296a, 2022
2022
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