| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ... Nucleic acids research 44 (W1), W3-W10, 2016 | 4629 | 2016 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 622 | 2018 |
| Dissemination of scientific software with Galaxy ToolShed D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ... Genome biology 15 (2), 1-3, 2014 | 239 | 2014 |
| HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ... Molecular biology and evolution 37 (1), 295-299, 2020 | 214 | 2020 |
| StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo Y Tang, E Bouvier, CK Kwok, Y Ding, A Nekrutenko, PC Bevilacqua, ... Bioinformatics 31 (16), 2668-2675, 2015 | 51 | 2015 |
| Bioconda: Sustainable and comprehensive software distribution for the life sciences R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... Nature Methods 15 (7), 475-476, 2018 | 34 | 2018 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research 50 (W1), W345-W351, 2022 | 23 | 2022 |
| No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics D Baker, M Van Den Beek, D Blankenberg, D Bouvier, J Chilton, N Coraor, ... PLoS pathogens 16 (8), e1008643, 2020 | 21 | 2020 |
| Ready-to-use public infrastructure for global SARS-CoV-2 monitoring W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ... Nature biotechnology 39 (10), 1178-1179, 2021 | 15 | 2021 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update E Afgan, A Nekrutenko, BA Grüning, D Blankenberg, J Goecks, ... Nucleic acids research, 2022 | 13 | 2022 |
| Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ... BioRxiv, 2021 | 8 | 2021 |
| Using Galaxy to Perform Large‐Scale Interactive Data Analyses—An Update A Ostrovsky, J Hillman‐Jackson, D Bouvier, D Clements, E Afgan, ... Current Protocols 1 (2), e31, 2021 | 4 | 2021 |
| RASCL: rapid assessment of SARS-CoV-2 clades through molecular sequence analysis AG Lucaci, JD Zehr, SD Shank, D Bouvier, H Mei, A Nekrutenko, ... BioRxiv, 2022 | 2 | 2022 |
| Expanding the Galaxy’s reference data N VijayKrishna, J Joshi, N Coraor, J Hillman-Jackson, D Bouvier, ... Bioinformatics Advances 2 (1), vbac030, 2022 | 2 | 2022 |
| Galaxy planemo 0.35. 0 J Chilton, P Cock, E Rasche, N Turaga, M Cech, B Grüning, N Soranzo, ... Zenodo, 2016 | 1 | 2016 |
| RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis AG Lucaci, JD Zehr, SD Shank, D Bouvier, A Ostrovsky, H Mei, ... Plos one 17 (11), e0275623, 2022 | | 2022 |
| RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis (preprint) AG Lucaci, JD Zehr, SD Shank, D Bouvier, H Mei, A Nekrutenko, ... | | 2022 |
| Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy A Guerler, D Baker, M van den Beek, B Gruening, D Bouvier, N Coraor, ... BioRxiv, 2021.03. 17.435706, 2021 | | 2021 |
| Rapid molecular sequence characterization of the SARS-CoV-2 variant of interest Lambda (C. 37) AG Lucaci, JD Zehr, SD Shank, S Weaver, D Bouvier, H Mei, ... | | |
