| Bayesian coalescent inference of past population dynamics from molecular sequences AJ Drummond, A Rambaut, B Shapiro, OG Pybus Molecular Biology and Evolution 22 (5), 1185-1192, 2005 | 3491 | 2005 |
| The effect of human mobility and control measures on the COVID-19 epidemic in China MUG Kraemer, CH Yang, B Gutierrez, CH Wu, B Klein, DM Pigott, ... Science 368 (6490), 493-497, 2020 | 3229 | 2020 |
| A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ... Nature Microbiology 5 (11), 1403-1407, 2020 | 2888 | 2020 |
| Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic GJD Smith, D Vijaykrishna, J Bahl, SJ Lycett, M Worobey, OG Pybus, ... Nature 459 (7250), 1122-1125, 2009 | 2884 | 2009 |
| Pandemic potential of a strain of influenza A (H1N1): early findings C Fraser, CA Donnelly, S Cauchemez, WP Hanage, MD Van Kerkhove, ... Science 324 (5934), 1557-1561, 2009 | 2572 | 2009 |
| An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China H Tian, Y Liu, Y Li, CH Wu, B Chen, MUG Kraemer, B Li, J Cai, B Xu, ... Science 368 (6491), 638-642, 2020 | 2245 | 2020 |
| Global distribution and prevalence of hepatitis C virus genotypes JP Messina, I Humphreys, A Flaxman, A Brown, GS Cooke, OG Pybus, ... Hepatology 61 (1), 77-87, 2015 | 2238 | 2015 |
| Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) A Rambaut, TT Lam, L Max Carvalho, OG Pybus Virus Evolution 2 (1), vew007, 2016 | 1921 | 2016 |
| Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021 | 1708 | 2021 |
| Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1637 | 2022 |
| Unifying the epidemiological and evolutionary dynamics of pathogens BT Grenfell, OG Pybus, JR Gog, JLN Wood, JM Daly, JA Mumford, ... Science 303 (5656), 327-332, 2004 | 1610 | 2004 |
| Zika virus in the Americas: early epidemiological and genetic findings NR Faria, RSS Azevedo, MUG Kraemer, R Souza, MS Cunha, SC Hill, ... Science 352 (6283), 345-349, 2016 | 1242 | 2016 |
| Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature Protocols 12 (6), 1261, 2017 | 1176 | 2017 |
| Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75, 2021 | 1174 | 2021 |
| The genomic and epidemiological dynamics of human influenza A virus A Rambaut, OG Pybus, MI Nelson, C Viboud, JK Taubenberger, ... Nature 453 (7195), 615-619, 2008 | 1141 | 2008 |
| Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool Á O’Toole, E Scher, A Underwood, B Jackson, V Hill, JT McCrone, ... Virus Evolution 7 (2), veab064, 2021 | 1085 | 2021 |
| Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus MUG Kraemer, RC Reiner, OJ Brady, JP Messina, M Gilbert, DM Pigott, ... Nature Microbiology 4 (5), 854-863, 2019 | 1071 | 2019 |
| The early spread and epidemic ignition of HIV-1 in human populations NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, MJ Ward, ... Science 346 (6205), 56-61, 2014 | 1054 | 2014 |
| Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence EC Sabino, LF Buss, MPS Carvalho, CA Prete, MAE Crispim, NA Fraiji, ... The Lancet 397 (10273), 452-455, 2021 | 968 | 2021 |
| Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations A Rambaut, N Loman, O Pybus, W Barclay, J Barrett, A Carabelli, ... virological.org, https://virological.org/t/563, 2020 | 947* | 2020 |
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
