| The expanding landscape of alternative splicing variation in human populations E Park, Z Pan, Z Zhang, L Lin, Y Xing The American Journal of Human Genetics 102 (1), 11-26, 2018 | 330 | 2018 |
| Deep-learning augmented RNA-seq analysis of transcript splicing Z Zhang, Z Pan, Y Ying, Z Xie, S Adhikari, J Phillips, RP Carstens, ... Nature methods 16 (4), 307-310, 2019 | 96 | 2019 |
| PSI: a comprehensive and integrative approach for accurate plant subcellular localization prediction L Liu, Z Zhang, Q Mei, M Chen PLoS One 8 (10), e75826, 2013 | 63 | 2013 |
| CLIP-seq analysis of multi-mapped reads discovers novel functional RNA regulatory sites in the human transcriptome Z Zhang, Y Xing Nucleic acids research 45 (16), 9260-9271, 2017 | 50 | 2017 |
| An automated framework for efficiently designing deep convolutional neural networks in genomics Z Zhang, CY Park, CL Theesfeld, OG Troyanskaya Nature Machine Intelligence 3 (5), 392-400, 2021 | 43 | 2021 |
| Cleft lip and cleft palate in Esrp1 knockout mice is associated with alterations in epithelial-mesenchymal crosstalk SK Lee, MJ Sears, Z Zhang, H Li, I Salhab, P Krebs, Y Xing, HD Nah, ... Development 147 (21), dev187369, 2020 | 35 | 2020 |
| An integrative bioinformatics framework for genome-scale multiple level network reconstruction of rice L Liu, Q Mei, Z Yu, T Sun, Z Zhang, M Chen Journal of integrative bioinformatics 10 (2), 94-102, 2013 | 35 | 2013 |
| CROTON: an automated and variant-aware deep learning framework for predicting CRISPR/Cas9 editing outcomes VR Li, Z Zhang, OG Troyanskaya Bioinformatics 37 (Supplement_1), i342-i348, 2021 | 19 | 2021 |
| A panoramic view of RNA modifications: exploring new frontiers Z Zhang, E Park, L Lin, Y Xing Genome biology 19, 1-3, 2018 | 18 | 2018 |
| Artificial intelligence in ventricular arrhythmias and sudden death L Holmström, FZ Zhang, D Ouyang, D Dey, PJ Slomka, SS Chugh Arrhythmia & Electrophysiology Review 12, 2023 | 7 | 2023 |
| Neural architecture search for joint optimization of predictive power and biological knowledge Z Zhang, L Zhou, L Gou, YN Wu arXiv preprint arXiv:1909.00337, 2019 | 7 | 2019 |
| DEF: an automated dead-end filling approach based on quasi-endosymbiosis L Liu, Z Zhang, T Sheng, M Chen Bioinformatics 33 (3), 405-413, 2017 | 7 | 2017 |
| Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection N Sauerwald, Z Zhang, I Ramos, VD Nair, A Soares-Schanoski, Y Ge, ... Cell Systems 13 (11), 924-931. e4, 2022 | 6 | 2022 |
| AMBIENT: accelerated convolutional neural network architecture search for regulatory genomics Z Zhang, EM Cofer, OG Troyanskaya bioRxiv, 2021.02. 25.432960, 2021 | 5 | 2021 |
| Dynamic electrocardiogram changes are a novel risk marker for sudden cardiac death HN Pham, L Holmstrom, H Chugh, A Uy-Evanado, K Nakamura, Z Zhang, ... European heart journal 45 (10), 809-819, 2024 | 4 | 2024 |
| Explainable multilayer graph neural network for cancer gene prediction M Chatzianastasis, M Vazirgiannis, Z Zhang Bioinformatics 39 (11), btad643, 2023 | 4 | 2023 |
| Atlas of primary cell-type-specific sequence models of gene expression and variant effects K Sokolova, CL Theesfeld, AK Wong, Z Zhang, K Dolinski, ... Cell Reports Methods 3 (9), 2023 | 4 | 2023 |
| Interpretable neural architecture search and transfer learning for understanding CRISPR–Cas9 off-target enzymatic reactions Z Zhang, AR Lamson, M Shelley, O Troyanskaya Nature Computational Science 3 (12), 1056-1066, 2023 | 2 | 2023 |
| Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease Z Zhang, N Sauerwald, A Cappuccio, I Ramos, VD Nair, G Nudelman, ... Cell reports methods 3 (2), 2023 | 2 | 2023 |
| Reusability report: Prostate cancer stratification with diverse biologically-informed neural architectures C Pedersen, T Tesileanu, T Wu, S Golkar, M Cranmer, Z Zhang, S Ho arXiv preprint arXiv:2309.16645, 2023 | 1 | 2023 |
