Topological knots and links in proteins P Dabrowski-Tumanski, JI Sulkowska Proceedings of the National Academy of Sciences 114 (13), 3415-3420, 2017 | 123 | 2017 |
Molecule edit graph attention network: modeling chemical reactions as sequences of graph edits M Sacha, M Błaz, P Byrski, P Dabrowski-Tumanski, M Chrominski, ... Journal of Chemical Information and Modeling 61 (7), 3273-3284, 2021 | 114 | 2021 |
KnotProt 2.0: a database of proteins with knots and other entangled structures P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ... Nucleic acids research 47 (D1), D367-D375, 2019 | 91 | 2019 |
Complex lasso: new entangled motifs in proteins W Niemyska, P Dabrowski-Tumanski, M Kadlof, E Haglund, P Sułkowski, ... Scientific reports 6 (1), 36895, 2016 | 79 | 2016 |
In search of functional advantages of knots in proteins P Dabrowski-Tumanski, A Stasiak, JI Sulkowska PloS one 11 (11), e0165986, 2016 | 64 | 2016 |
Topoly: Python package to analyze topology of polymers P Dabrowski-Tumanski, P Rubach, W Niemyska, BA Gren, JI Sulkowska Briefings in Bioinformatics 22 (3), bbaa196, 2021 | 56 | 2021 |
LassoProt: server to analyze biopolymers with lassos P Dabrowski-Tumanski, W Niemyska, P Pasznik, JI Sulkowska Nucleic acids research 44 (W1), W383-W389, 2016 | 56 | 2016 |
To tie or not to tie? That is the question P Dabrowski-Tumanski, JI Sulkowska Polymers 9 (9), 454, 2017 | 55 | 2017 |
LinkProt: a database collecting information about biological links P Dabrowski-Tumanski, AI Jarmolinska, W Niemyska, EJ Rawdon, ... Nucleic acids research, gkw976, 2016 | 49 | 2016 |
Protein knotting by active threading of nascent polypeptide chain exiting from the ribosome exit channel P Dabrowski-Tumanski, M Piejko, S Niewieczerzal, A Stasiak, ... The Journal of Physical Chemistry B 122 (49), 11616-11625, 2018 | 38 | 2018 |
Prediction of the optimal set of contacts to fold the smallest knotted protein P Dabrowski-Tumanski, AI Jarmolinska, JI Sulkowska Journal of Physics: Condensed Matter 27 (35), 354109, 2015 | 30 | 2015 |
The exclusive effects of chaperonin on the behavior of proteins with 52 knot Y Zhao, P Dabrowski-Tumanski, S Niewieczerzal, JI Sulkowska PLoS computational biology 14 (3), e1005970, 2018 | 29 | 2018 |
PyLasso: a PyMOL plugin to identify lassos AM Gierut, W Niemyska, P Dabrowski-Tumanski, P Sułkowski, ... Bioinformatics 33 (23), 3819-3821, 2017 | 22 | 2017 |
Efficient and rapid synthesis of nucleoside diphosphate sugars from nucleoside phosphorimidazolides P Dabrowski‐Tumanski, J Kowalska, J Jemielity European Journal of Organic Chemistry 2013 (11), 2147-2154, 2013 | 22 | 2013 |
-curves in proteins P Dabrowski-Tumanski, D Goundaroulis, A Stasiak, JI Sulkowska arXiv preprint arXiv:1908.05919, 2019 | 15 | 2019 |
GapRepairer: a server to model a structural gap and validate it using topological analysis AI Jarmolinska, M Kadlof, P Dabrowski-Tumanski, JI Sulkowska Bioinformatics 34 (19), 3300-3307, 2018 | 14 | 2018 |
PyLink: a PyMOL plugin to identify links AM Gierut, P Dabrowski-Tumanski, W Niemyska, KC Millett, JI Sulkowska Bioinformatics 35 (17), 3166-3168, 2019 | 13 | 2019 |
Genus trace reveals the topological complexity and domain structure of biomolecules S Zając, C Geary, ES Andersen, P Dabrowski-Tumanski, JI Sulkowska, ... Scientific Reports 8 (1), 17537, 2018 | 9 | 2018 |
Statistical properties of lasso-shape polymers and their implications for complex lasso proteins function P Dabrowski-Tumanski, B Gren, JI Sulkowska Polymers 11 (4), 707, 2019 | 7 | 2019 |
A topological selection of folding pathways from native states of knotted proteins A Barbensi, N Yerolemou, O Vipond, BI Mahler, P Dabrowski-Tumanski, ... Symmetry 13 (9), 1670, 2021 | 6 | 2021 |