Susan P Holmes

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	Toate	Din 2018
Referințe bibliografice	70460	60642
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Paul J McMurdiePrincipal Bioinformatics Scientist at D2G OncologyAdresă de e-mail confirmată pe d2g-oncology.com
Benjamin CallahanAssociate Professor, NC State UniversityAdresă de e-mail confirmată pe ncsu.edu
David RelmanStanford UniversityAdresă de e-mail confirmată pe stanford.edu
Catherine BlishStanfordAdresă de e-mail confirmată pe stanford.edu
Robert ShaferProfessor of Medicine, Stanford UniversityAdresă de e-mail confirmată pe stanford.edu
Michael RosenHead of Computational Biology, D2G Oncology, Inc.Adresă de e-mail confirmată pe d2g-oncology.com
Kris SankaranAssistant Professor of Statistics, University of Wisconsin - MadisonAdresă de e-mail confirmată pe wisc.edu
Julia FukuyamaAssistant Professor, Department of Statistics, Indiana University BloomingtonAdresă de e-mail confirmată pe fhcrc.org
Diana M. ProctorNational Institutes of Health (current), Stanford UniversityAdresă de e-mail confirmată pe nih.gov
Christof SeilerMaastricht University, University Hospital Zurich, and University of ZurichAdresă de e-mail confirmată pe maastrichtuniversity.nl
Deborah M GordonProfessor, Dept. of Biology, Stanford UniversityAdresă de e-mail confirmată pe stanford.edu
Thanmayi RanganathStanford School of MedicineAdresă de e-mail confirmată pe stanford.edu
Ronald J WongStanford University School of MedicineAdresă de e-mail confirmată pe stanford.edu
Pratheepa JeganathanAssistant Professor, McMaster UniversityAdresă de e-mail confirmată pe mcmaster.ca
Alfred SpormannStanfordAdresă de e-mail confirmată pe stanford.edu
Claire DonnatUniversity of ChicagoAdresă de e-mail confirmată pe uchicago.edu
Daniela Aliaga GoltsmanAssociate Director, Metagenomi IncAdresă de e-mail confirmată pe berkeley.edu
Christine L. SunSenior research associate, Center of Microbiome Research, The Ohio State UniversityAdresă de e-mail confirmată pe osu.edu
Lan Huong NguyenGoogle LLCAdresă de e-mail confirmată pe google.com
Karen VogtmannUniversity of WarwickAdresă de e-mail confirmată pe warwick.ac.uk

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Susan P Holmes

Professor of Statistics, Stanford University

Adresă de e-mail confirmată pe stat.stanford.edu - Pagina de pornire

Statistics and Biology Immunology Microbial Ecology Reproducible research MCMC


Titlu Sortați după descrierea bibliografică Sortați după an Sortați după titlu	Citat de Citat de	Anul
DADA2: High-resolution sample inference from Illumina amplicon data BJ Callahan, PJ McMurdie, MJ Rosen, AW Han, AJA Johnson, ... Nature methods 13 (7), 581-583, 2016	18325	2016
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data PJ McMurdie, S Holmes PloS one 8 (4), e61217, 2013	13579	2013
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019	11464	2019
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. PJ McMurdie, S Holmes PLOS Computational Biology 10 (4), 2014	2611	2014
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis BJ Callahan, PJ McMurdie, SP Holmes The ISME Journal, 1-5, 2017	2605	2017
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data NM Davis, D Proctor, SP Holmes, DA Relman, BJ Callahan biorxiv, 2018	1778	2018
Temporal and spatial variation of the human microbiota during pregnancy DB DiGiulio, BJ Callahan, PJ McMurdie, EK Costello, DJ Lyell, ... Proceedings of the National Academy of Sciences 112 (35), 11060-11065, 2015	1073	2015
Bootstrap confidence levels for phylogenetic trees B Efron, E Halloran, S Holmes Proceedings of the National Academy of Sciences 93 (23), 13429-13429, 1996	1044	1996
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018	890	2018
Bioconductor workflow for microbiome data analysis: from raw reads to community analyses BJ Callahan, K Sankaran, JA Fukuyama, PJ McMurdie, SP Holmes F1000Research 5, 2016	835	2016
Variability in the analysis of a single neuroimaging dataset by many teams R Botvinik-Nezer, F Holzmeister, CF Camerer, A Dreber, J Huber, ... Nature 582 (7810), 84-88, 2020	789	2020
Geometry of the space of phylogenetic trees LJ Billera, SP Holmes, K Vogtmann Advances in Applied Mathematics 27 (4), 733-767, 2001	747	2001
Advancing our understanding of the human microbiome using QIIME JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ... Methods in enzymology 531, 371-444, 2013	617	2013
A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes F Cruciani, P Santolamazza, P Shen, V Macaulay, P Moral, A Olckers, ... American journal of human genetics 70 (5), 1197, 2002	487	2002
Colonic contribution to uremic solutes PA Aronov, FJG Luo, NS Plummer, Z Quan, S Holmes, TH Hostetter, ... Journal of the American Society of Nephrology: JASN 22 (9), 1769, 2011	426	2011
Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle A Gorvitovskaia, SP Holmes, SM Huse Microbiome 4 (15), DOI: 10.1186/s40168-016-0160-7, 2016	377	2016
Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage M Yan, SJ Pamp, J Fukuyama, PH Hwang, DY Cho, S Holmes, ... Cell host & microbe 14 (6), 631-640, 2013	361	2013
Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women B Callahan, D DiGiulio, D Goltsman, C Sun, E Costello, P Jeganathan, ... PNAS, 201705899, 2017	343	2017
Analysis of a nonreversible Markov chain sampler P Diaconis, S Holmes, RM Neal Annals of Applied Probability, 726-752, 2000	328	2000
The molecular architecture of the eukaryotic chaperonin TRiC/CCT A Leitner, LA Joachimiak, A Bracher, L Mönkemeyer, T Walzthoeni, ... Structure 20 (5), 814-825, 2012	307	2012

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