Shilpa Garg
Citat de
Citat de
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
E Afgan, A Nekrutenko, BA Grüning, D Blankenberg, J Goecks, ...
Nucleic acids research 50 (W1), 2022
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
WhatsHap: fast and accurate read-based phasing
M Martin, M Patterson, S Garg, S O Fischer, N Pisanti, GW Klau, ...
BioRxiv, 085050, 2016
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21 (1), 139-162, 2020
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
Dense and accurate whole-chromosome haplotyping of individual genomes
D Porubsky, S Garg, AD Sanders, JO Korbel, V Guryev, PM Lansdorp, ...
Nature communications 8 (1), 1293, 2017
Computational methods for chromosome-scale haplotype reconstruction
S Garg
Genome biology 22 (1), 101, 2021
A graph-based approach to diploid genome assembly
S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall
Bioinformatics 34 (13), i105-i114, 2018
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
CJ Smith, O Castanon, K Said, V Volf, P Khoshakhlagh, A Hornick, ...
Nucleic acids research 48 (9), 5183-5195, 2020
Recombination between heterologous human acrocentric chromosomes
A Guarracino, S Buonaiuto, LG de Lima, T Potapova, A Rhie, S Koren, ...
Nature 617 (7960), 335-343, 2023
Read-based phasing of related individuals
S Garg, M Martin, T Marschall
Bioinformatics 32 (12), i234-i242, 2016
Increased mutation and gene conversion within human segmental duplications
MR Vollger, PC Dishuck, WT Harvey, WS DeWitt, X Guitart, ME Goldberg, ...
Nature 617 (7960), 325-334, 2023
VividhaVahana: smartphone based vehicle classification and its applications in developing region
S Garg, P Singh, P Ramanathan, R Sen
Proceedings of the 11th International Conference on Mobile and Ubiquitous …, 2014
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph
S Garg, J Aach, H Li, I Sebenius, R Durbin, G Church
Bioinformatics 36 (8), 2385-2392, 2020
O Fischer
M Martin, M Patterson, S Garg
S., Pisanti, N., Klau, GW, Schöenhuth, A., & Marschall, 2016
Gaps and complex structurally variant loci in phased genome assemblies
D Porubsky, MR Vollger, WT Harvey, AN Rozanski, P Ebert, G Hickey, ...
Genome research 33 (4), 496-510, 2023
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