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Nitin Baliga
Nitin Baliga
Professor
Verified email at systemsbiology.org
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Cited by
Cited by
Year
Cytoscape: a software environment for integrated models of biomolecular interaction networks
P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ...
Genome research 13 (11), 2498-2504, 2003
335042003
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
8942000
Peroxiredoxins are conserved markers of circadian rhythms
RS Edgar, EW Green, Y Zhao, G Van Ooijen, M Olmedo, X Qin, Y Xu, ...
Nature 485 (7399), 459-464, 2012
8732012
Visualization of omics data for systems biology
N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ...
Nature methods 7 (Suppl 3), S56-S68, 2010
6992010
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ...
Genome biology 7, 1-16, 2006
6342006
CTCF physically links cohesin to chromatin
ED Rubio, DJ Reiss, PL Welcsh, CM Disteche, GN Filippova, NS Baliga, ...
Proceedings of the National Academy of Sciences 105 (24), 8309-8314, 2008
5972008
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ...
Genome research 14 (11), 2221-2234, 2004
3682004
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
3362007
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
DJ Reiss, NS Baliga, R Bonneau
BMC bioinformatics 7, 1-22, 2006
3062006
Catabolite Control Protein A (CcpA) Contributes to Virulence and Regulation of Sugar Metabolism in Streptococcus pneumoniae
R Iyer, NS Baliga, A Camilli
Journal of bacteriology 187 (24), 8340-8349, 2005
2192005
The Gaggle: an open-source software system for integrating bioinformatics software and data sources
PT Shannon, DJ Reiss, R Bonneau, NS Baliga
BMC bioinformatics 7 (1), 1-13, 2006
1962006
The DNA-binding network of Mycobacterium tuberculosis
KJ Minch, TR Rustad, EJR Peterson, J Winkler, DJ Reiss, S Ma, M Hickey, ...
Nature communications 6 (1), 5829, 2015
1872015
Adaptation of cells to new environments
AN Brooks, S Turkarslan, KD Beer, F Yin Lo, NS Baliga
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (5), 544-561, 2011
1852011
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
NS Baliga, SJ Bjork, R Bonneau, M Pan, C Iloanusi, MCH Kottemann, ...
Genome research 14 (6), 1025-1035, 2004
1822004
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
CL Plaisier, M Pan, NS Baliga
Genome research 22 (11), 2302-2314, 2012
1772012
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
NS Baliga, M Pan, YA Goo, EC Yi, DR Goodlett, K Dimitrov, P Shannon, ...
Proceedings of the National Academy of Sciences 99 (23), 14913-14918, 2002
1702002
Genome-wide CRISPR-Cas9 screens reveal loss of redundancy between PKMYT1 and WEE1 in glioblastoma stem-like cells
CM Toledo, Y Ding, P Hoellerbauer, RJ Davis, R Basom, EJ Girard, E Lee, ...
Cell reports 13 (11), 2425-2439, 2015
1512015
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 285, 2009
1492009
General transcription factor specified global gene regulation in archaea
MT Facciotti, DJ Reiss, M Pan, A Kaur, M Vuthoori, R Bonneau, ...
Proceedings of the National Academy of Sciences 104 (11), 4630-4635, 2007
1372007
Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana
J Ashworth, S Coesel, A Lee, EV Armbrust, MV Orellana, NS Baliga
Proceedings of the National Academy of Sciences 110 (18), 7518-7523, 2013
1322013
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