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Dave Ussery
Dave Ussery
Professor, Department of BioMedical Informatics, UAMS
Verified email at uams.edu - Homepage
Title
Cited by
Cited by
Year
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
K Lagesen, P Hallin, EA Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic acids research 35 (9), 3100-3108, 2007
56742007
Multilocus sequence typing of total-genome-sequenced bacteria
MV Larsen, S Cosentino, S Rasmussen, C Friis, H Hasman, RL Marvig, ...
Journal of clinical microbiology 50 (4), 1355-1361, 2012
22102012
The genome sequence of Schizosaccharomyces pombe
V Wood, R Gwilliam, MA Rajandream, M Lyne, R Lyne, A Stewart, ...
Nature 415 (6874), 871-880, 2002
21122002
DNA: structure and function
RR Sinden, CE Pearson, VN Potaman, DW Ussery
Advances in genome biology 5, 1-141, 1998
15351998
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
HJ Pel, JH de Winde, DB Archer, PS Dyer, G Hofmann, PJ Schaap, ...
Nature biotechnology 25 (2), 221-231, 2007
13682007
The minimum information about a genome sequence (MIGS) specification
D Field, G Garrity, T Gray, N Morrison, J Selengut, P Sterk, T Tatusova, ...
Nature biotechnology 26 (5), 541-547, 2008
13622008
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
11032014
Insights from 20 years of bacterial genome sequencing
M Land, L Hauser, SR Jun, I Nookaew, MR Leuze, TH Ahn, T Karpinets, ...
Functional & integrative genomics 15, 141-161, 2015
8762015
Comparison of 61 Sequenced Escherichia coli Genomes
O Lukjancenko, TM Wassenaar, DW Ussery
Microbial ecology 60, 708-720, 2010
6822010
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
C Kröger, SC Dillon, ADS Cameron, K Papenfort, SK Sivasankaran, ...
Proceedings of the National Academy of Sciences 109 (20), E1277-E1286, 2012
4672012
Benchmarking of methods for genomic taxonomy
MV Larsen, S Cosentino, O Lukjancenko, D Saputra, S Rasmussen, ...
Journal of clinical microbiology 52 (5), 1529-1539, 2014
3212014
Machine learning methods in drug discovery
L Patel, T Shukla, X Huang, DW Ussery, S Wang
Molecules 25 (22), 5277, 2020
2782020
The chromatin‐associated protein H‐NS alters DNA topology in vitro.
AE Tupper, TA Owen‐Hughes, DW Ussery, DS Santos, DJ Ferguson, ...
The EMBO journal 13 (1), 258-268, 1994
2751994
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
RS Kaas, C Friis, DW Ussery, FM Aarestrup
BMC genomics 13, 1-13, 2012
2682012
A DNA structural atlas for Escherichia coli
AG Pedersen, LJ Jensen, S Brunak, HH Stærfeldt, DW Ussery
Journal of molecular biology 299 (4), 907-930, 2000
2682000
The complete genome sequence and analysis of the epsilonproteobacterium Arcobacter butzleri
WG Miller, CT Parker, M Rubenfield, GL Mendz, MMSM Wösten, ...
PloS one 2 (12), e1358, 2007
2642007
RNammer: consistent annotation of rRNA genes in genomic sequences
K Lagesen, PF Hallin, E Rødland, HH Stærfeldt, T Rognes, DW Ussery
Nucleic Acids Res 35 (9), 3100-3108, 2007
2592007
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries
TT Binnewies, Y Motro, PF Hallin, O Lund, D Dunn, T La, DJ Hampson, ...
Functional & integrative genomics 6, 165-185, 2006
2532006
On the total number of genes and their length distribution in complete microbial genomes
M Skovgaard, LJ Jensen, S Brunak, D Ussery, A Krogh
TRENDS in Genetics 17 (8), 425-428, 2001
2532001
The Salmonella enterica Pan-genome
A Jacobsen, RS Hendriksen, FM Aaresturp, DW Ussery, C Friis
Microbial ecology 62, 487-504, 2011
2312011
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Articles 1–20