Nextstrain: real-time tracking of pathogen evolution J Hadfield, C Megill, SM Bell, J Huddleston, B Potter, C Callender, ... Bioinformatics 34 (23), 4121-4123, 2018 | 3257 | 2018 |
Phandango: an interactive viewer for bacterial population genomics J Hadfield, NJ Croucher, RJ Goater, K Abudahab, DM Aanensen, ... Bioinformatics, btx610, 2017 | 586 | 2017 |
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events VK Wong, S Baker, DJ Pickard, J Parkhill, AJ Page, NA Feasey, ... Nature genetics 47 (6), 632-639, 2015 | 505 | 2015 |
Cryptic transmission of SARS-CoV-2 in Washington state T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ... Science 370 (6516), 571-575, 2020 | 314 | 2020 |
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings NA Feasey, J Hadfield, KH Keddy, TJ Dallman, J Jacobs, X Deng, ... Nature genetics 48 (10), 1211-1217, 2016 | 202 | 2016 |
Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain J Hadfield, AF Brito, DM Swetnam, CBF Vogels, RE Tokarz, KG Andersen, ... PLoS pathogens 15 (10), e1008042, 2019 | 148 | 2019 |
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran JS Eden, R Rockett, I Carter, H Rahman, J De Ligt, J Hadfield, M Storey, ... Virus evolution 6 (1), veaa027, 2020 | 146 | 2020 |
Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion J Hadfield, SR Harris, HMB Seth-Smith, S Parmar, P Andersson, ... Genome research 27 (7), 1220-1229, 2017 | 126 | 2017 |
Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host EJ Klemm, E Gkrania-Klotsas, J Hadfield, JL Forbester, SR Harris, C Hale, ... Nature microbiology 1 (3), 1-6, 2016 | 97 | 2016 |
Molecular characterisation of a novel cassava associated circular ssDNA virus A Dayaram, A Opong, A Jäschke, J Hadfield, M Baschiera, RCJ Dobson, ... Virus research 166 (1-2), 130-135, 2012 | 65 | 2012 |
Molecular characterisation of dicot-infecting mastreviruses from Australia J Hadfield, JE Thomas, MW Schwinghamer, S Kraberger, D Stainton, ... Virus research 166 (1-2), 13-22, 2012 | 52 | 2012 |
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages P Andersson, SR Harris, HMBS Smith, J Hadfield, C O’Neill, LT Cutcliffe, ... Nature communications 7 (1), 10688, 2016 | 45 | 2016 |
The Seattle Flu Study: a multiarm community-based prospective study protocol for assessing influenza prevalence, transmission and genomic epidemiology HY Chu, M Boeckh, JA Englund, M Famulare, B Lutz, DA Nickerson, ... BMJ open 10 (10), e037295, 2020 | 39 | 2020 |
Evolution and rapid spread of a reassortant A (H3N2) virus that predominated the 2017–2018 influenza season BI Potter, R Kondor, J Hadfield, J Huddleston, J Barnes, T Rowe, L Guo, ... Virus evolution 5 (2), vez046, 2019 | 33 | 2019 |
Australian monocot-infecting mastrevirus diversity rivals that in Africa S Kraberger, JE Thomas, ADW Geering, A Dayaram, D Stainton, ... Virus research 169 (1), 127-136, 2012 | 24 | 2012 |
The Nature and Extent of Plasmid Variation in Chlamydia trachomatis CA Jones, J Hadfield, NR Thomson, DW Cleary, P Marsh, IN Clarke, ... Microorganisms 8 (3), 373, 2020 | 17 | 2020 |
The role of Kenya in the trans-African spread of maize streak virus strain A D Pande, E Madzokere, P Hartnady, S Kraberger, J Hadfield, K Rosario, ... Virus research 232, 69-76, 2017 | 16 | 2017 |
Modeling secondary messenger pathways in neurovascular coupling J Hadfield, MJ Plank, T David Bulletin of mathematical biology 75, 428-443, 2013 | 14 | 2013 |
Complete genome sequence of a dahlia common mosaic virus isolate from New Zealand J Hadfield, D Linderme, DN Shepherd, M Bezuidenhout, P Lefeuvre, ... Archives of virology 156, 2297-2301, 2011 | 12 | 2011 |
Bromus catharticus striate mosaic virus: a new mastrevirus infecting Bromus catharticus from Australia J Hadfield, DP Martin, D Stainton, S Kraberger, BE Owor, DN Shepherd, ... Archives of virology 156, 335-341, 2011 | 9 | 2011 |