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Jose Rodriguez
Jose Rodriguez
Cardiovascular Proteomics, Spanish National Center for Cardiovascular Research (CNIC)
Verified email at cnic.es
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
123092012
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
47002012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
13692011
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ...
Human molecular genetics 23 (22), 5866-5878, 2014
6992014
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
6122020
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
2372019
APPRIS: annotation of principal and alternative splice isoforms
JM Rodriguez, P Maietta, I Ezkurdia, A Pietrelli, JJ Wesselink, G Lopez, ...
Nucleic acids research 41 (D1), D110-D117, 2013
2052013
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17 (1), 1-19, 2016
1272016
Interoperability with Moby 1.0-it's better than sharing your toothbrush!
M Wilkinson
Nature Precedings, 1-1, 2008
1242008
APPRIS 2017: principal isoforms for multiple gene sets
JM Rodriguez, J Rodriguez-Rivas, T Di Domenico, J Vázquez, A Valencia, ...
Nucleic acids research 46 (D1), D213-D217, 2018
1142018
Most highly expressed protein-coding genes have a single dominant isoform
I Ezkurdia, JM Rodriguez, E Carrillo-de Santa Pau, J Vázquez, A Valencia, ...
Journal of proteome research 14 (4), 1880-1887, 2015
1042015
Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function
I Ezkurdia, A del Pozo, A Frankish, JM Rodriguez, J Harrow, K Ashman, ...
Molecular biology and evolution 29 (9), 2265-2283, 2012
942012
De Novo Assembly and Functional Annotation of the Olive (Olea europaea) Transcriptome
A Munoz-Mérida, JJ González-Plaza, A Canada, ANAM Blanco, ...
DNA research 20 (1), 93-108, 2013
872013
Alternatively spliced homologous exons have ancient origins and are highly expressed at the protein level
F Abascal, I Ezkurdia, J Rodriguez-Rivas, JM Rodriguez, A del Pozo, ...
PLoS computational biology 11 (6), e1004325, 2015
782015
Perspectives on ENCODE
MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ...
Nature 583 (7818), 693-698, 2020
622020
PanDrugs: a novel method to prioritize anticancer drug treatments according to individual genomic data
E Piñeiro-Yáñez, M Reboiro-Jato, G Gómez-López, J Perales-Patón, ...
Genome medicine 10 (1), 1-11, 2018
612018
Loose ends: almost one in five human genes still have unresolved coding status
F Abascal, D Juan, I Jungreis, L Martinez, M Rigau, JM Rodriguez, ...
Nucleic acids research 46 (14), 7070-7084, 2018
582018
firestar —advances in the prediction of functionally important residues
G Lopez, P Maietta, JM Rodriguez, A Valencia, ML Tress
Nucleic acids research 39 (suppl_2), W235-W241, 2011
502011
The EMBRACE web service collection
S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ...
Nucleic acids research 38 (suppl_2), W683-W688, 2010
442010
An analysis of tissue-specific alternative splicing at the protein level
JM Rodriguez, F Pozo, T Di Domenico, J Vazquez, ML Tress
PLoS computational biology 16 (10), e1008287, 2020
382020
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Articles 1–20