| The neXtProt knowledgebase in 2020: data, tools and usability improvements M Zahn-Zabal, PA Michel, A Gateau, F Nikitin, M Schaeffer, E Audot, ... Nucleic Acids Research 48 (D1), D328-D334, 2020 | 180 | 2020 |
| The neXtProt knowledgebase on human proteins: 2017 update P Gaudet, PA Michel, M Zahn-Zabal, A Britan, I Cusin, M Domagalski, ... Nucleic acids research 45 (D1), D177-D182, 2017 | 178 | 2017 |
| EasyProt—an easy-to-use graphical platform for proteomics data analysis F Gluck, C Hoogland, P Antinori, X Robin, F Nikitin, A Zufferey, ... Journal of proteomics 79, 146-160, 2013 | 80 | 2013 |
| QuickMod: A tool for open modification spectrum library searches E Ahrné, F Nikitin, F Lisacek, M Muller Journal of proteome research 10 (7), 2913-2921, 2011 | 65 | 2011 |
| Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding Y Zhang, M Muller, B Xu, Y Yoshida, O Horlacher, F Nikitin, S Garessus, ... Proteomics 15 (15), 2568-2579, 2015 | 55 | 2015 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| Rech de Laval, V.; Samarasinghe, K.; Bairoch, A.; Lane, L M Zahn-Zabal, PA Michel, A Gateau, F Nikitin, M Schaeffer, E Audot, ... The neXtProt knowledgebase in, 2020 | 33 | 2020 |
| MzJava: An open source library for mass spectrometry data processing O Horlacher, F Nikitin, D Alocci, J Mariethoz, M Müller, F Lisacek Journal of proteomics 129, 63-70, 2015 | 32 | 2015 |
| An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates E Ahrné, Y Ohta, F Nikitin, A Scherl, F Lisacek, M Müller Proteomics 11 (20), 4085-4095, 2011 | 32 | 2011 |
| Clustering and filtering tandem mass spectra acquired in data-independent mode H Pak, F Nikitin, F Gluck, F Lisacek, A Scherl, M Muller Journal of The American Society for Mass Spectrometry 24 (12), 1862-1871, 2013 | 17 | 2013 |
| Using protein motif combinations to update KEGG pathway maps and orthologue tables F Nikitin, B Rance, M Itoh, M Kanehisa, F Lisacek Genome Informatics 15 (2), 266-275, 2004 | 14 | 2004 |
| Rech de Laval V. et al M Zahn-Zabal, PA Michel, A Gateau, F Nikitin, M Schaeffer, E Audot, ... The neXtProt knowledgebase in, 2020 | 12 | 2020 |
| Consistency checks for characterizing protein forms C Chichester, F Nikitin, JC Ravarini, F Lisacek Computational biology and chemistry 27 (1), 29-35, 2003 | 11 | 2003 |
| Shaping biological knowledge: applications in proteomics F Lisacek, C Chichester, P Gonnet, O Jaillet, S Kappus, F Nikitin, ... Comparative and functional genomics 5 (2), 190-195, 2004 | 9 | 2004 |
| Optimization by infusion of multiple reaction monitoring transitions for sensitive quantification of peptides by liquid chromatography/mass spectrometry B Alghanem, F Nikitin, T Stricker, E Duchoslav, J Luban, ... Rapid Communications in Mass Spectrometry 31 (9), 753-761, 2017 | 7 | 2017 |
| Investigating protein domain combinations in complete proteomes F Nikitin, F Lisacek Computational Biology and Chemistry 27 (4-5), 481-495, 2003 | 6 | 2003 |
| Detection and annotation of common post-translational modifications in mass spectrometry data J Mariethoz, O Horlacher, F Nikitin, MP Campbell, NH Packer, M Muller, ... Farm animal proteomics 2013: Proceedings of the 4th Management Committee …, 2013 | | 2013 |
| Dedicated resources for MPT identification F Lisacek, PM Palagi, E Ahrné, M Müller, F Nikitin, C Hoogland, ... Universidad de Córdoba, Servicio de Publicaciones, 2011 | | 2011 |
| Towards fast and reliable candidate peptide indexing for Tandem Mass Spectrometry data R Kuzyakiv, M Müller, F Beekkof, F Nikitin, F Lisacek, S Voloshynovskiy Proceedings of the 10th IEEE International Conference on Information …, 2010 | | 2010 |
| Computer-Aided Strategies for Characterizing Protein Isoforms F Nikitin, F Lisacek Handbook of Proteomic Methods, 259-268, 2003 | | 2003 |
