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Frederic Nikitin
Frederic Nikitin
swiss institute bioinformatics
Verified email at sib-isb.ch
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Cited by
Year
The neXtProt knowledgebase on human proteins: 2017 update
P Gaudet, PA Michel, M Zahn-Zabal, A Britan, I Cusin, M Domagalski, ...
Nucleic acids research 45 (D1), D177-D182, 2017
1612017
The neXtProt knowledgebase in 2020: data, tools and usability improvements
M Zahn-Zabal, PA Michel, A Gateau, F Nikitin, M Schaeffer, E Audot, ...
Nucleic Acids Research 48 (D1), D328-D334, 2020
1232020
EasyProt—an easy-to-use graphical platform for proteomics data analysis
F Gluck, C Hoogland, P Antinori, X Robin, F Nikitin, A Zufferey, ...
Journal of proteomics 79, 146-160, 2013
762013
QuickMod: A tool for open modification spectrum library searches
E Ahrné, F Nikitin, F Lisacek, M Müller
Journal of proteome research 10 (7), 2913-2921, 2011
612011
Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding
Y Zhang, M Muller, B Xu, Y Yoshida, O Horlacher, F Nikitin, S Garessus, ...
Proteomics 15 (15), 2568-2579, 2015
482015
The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases
SIB Swiss Institute of Bioinformatics Members
Nucleic acids research 44 (D1), D27-D37, 2016
452016
MzJava: An open source library for mass spectrometry data processing
O Horlacher, F Nikitin, D Alocci, J Mariethoz, M Müller, F Lisacek
Journal of proteomics 129, 63-70, 2015
302015
An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates
E Ahrné, Y Ohta, F Nikitin, A Scherl, F Lisacek, M Müller
Proteomics 11 (20), 4085-4095, 2011
272011
Rech de Laval, V.; Samarasinghe, K.; Bairoch, A.; Lane, L
M Zahn-Zabal, PA Michel, A Gateau, F Nikitin, M Schaeffer, E Audot, ...
The neXtProt knowledgebase in, 2020
262020
Clustering and filtering tandem mass spectra acquired in data-independent mode
H Pak, F Nikitin, F Gluck, F Lisacek, A Scherl, M Muller
Journal of The American Society for Mass Spectrometry 24 (12), 1862-1871, 2013
162013
Using protein motif combinations to update KEGG pathway maps and orthologue tables
F Nikitin, B Rance, M Itoh, M Kanehisa, F Lisacek
Genome Informatics 15 (2), 266-275, 2004
142004
Consistency checks for characterizing protein forms
C Chichester, F Nikitin, JC Ravarini, F Lisacek
Computational biology and chemistry 27 (1), 29-35, 2003
122003
Shaping biological knowledge: applications in proteomics
F Lisacek, C Chichester, P Gonnet, O Jaillet, S Kappus, F Nikitin, ...
Comparative and functional genomics 5 (2), 190-195, 2004
82004
Investigating protein domain combinations in complete proteomes
F Nikitin, F Lisacek
Computational Biology and Chemistry 27 (4-5), 481-495, 2003
72003
Rech de Laval V. et al
M Zahn-Zabal, PA Michel, A Gateau, F Nikitin, M Schaeffer, E Audot, ...
The neXtProt knowledgebase in, 2020
62020
Optimization by infusion of multiple reaction monitoring transitions for sensitive quantification of peptides by liquid chromatography/mass spectrometry
B Alghanem, F Nikitin, T Stricker, E Duchoslav, J Luban, ...
Rapid Communications in Mass Spectrometry 31 (9), 753-761, 2017
62017
Detection and annotation of common post-translational modifications in mass spectrometry data
J Mariethoz, O Horlacher, F Nikitin, MP Campbell, NH Packer, M Muller, ...
Farm animal proteomics 2013, 21-22, 2013
2013
Dedicated resources for MPT identification
F Lisacek, PM Palagi, E Ahrné, M Müller, F Nikitin, C Hoogland, ...
Universidad de Córdoba, Servicio de Publicaciones, 2011
2011
Towards fast and reliable candidate peptide indexing for Tandem Mass Spectrometry data
R Kuzyakiv, M Müller, F Beekkof, F Nikitin, F Lisacek, S Voloshynovskiy
Proceedings of the 10th IEEE International Conference on Information …, 2010
2010
Computer-Aided Strategies for Characterizing
F Nikitin, F Lisacek
Handbook of Proteomic Methods, 259, 2003
2003
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Articles 1–20