A model for random sampling and estimation of relative protein abundance in shotgun proteomics H Liu, RG Sadygov, JR Yates
Analytical chemistry 76 (14), 4193-4201, 2004
3023 2004 Shotgun identification of protein modifications from protein complexes and lens tissue MJ MacCoss, WH McDonald, A Saraf, R Sadygov, JM Clark, JJ Tasto, ...
Proceedings of the National Academy of Sciences 99 (12), 7900-7905, 2002
732 2002 Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book RG Sadygov, D Cociorva, JR Yates III
Nature methods 1 (3), 195-202, 2004
542 2004 MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications WH McDonald, DL Tabb, RG Sadygov, MJ MacCoss, J Venable, ...
Rapid Communications in Mass Spectrometry 18 (18), 2162-2168, 2004
390 2004 A correlation algorithm for the automated quantitative analysis of shotgun proteomics data MJ MacCoss, CC Wu, H Liu, R Sadygov, JR Yates
Analytical chemistry 75 (24), 6912-6921, 2003
324 2003 A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases RG Sadygov, JR Yates
Analytical chemistry 75 (15), 3792-3798, 2003
258 2003 Code developments to improve the efficiency of automated MS/MS spectra interpretation RG Sadygov, J Eng, E Durr, A Saraf, H McDonald, MJ MacCoss, JR Yates
Journal of proteome research 1 (3), 211-215, 2002
242 2002 Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases RG Sadygov, H Liu, JR Yates
Analytical chemistry 76 (6), 1664-1671, 2004
151 2004 Cognitive enhancement with rosiglitazone links the hippocampal PPARγ and ERK MAPK signaling pathways LA Denner, J Rodriguez-Rivera, SJ Haidacher, JB Jahrling, JR Carmical, ...
Journal of Neuroscience 32 (47), 16725-16735, 2012
136 2012 ChromAlign: a two-step algorithmic procedure for time alignment of three-dimensional LC− MS chromatographic surfaces RG Sadygov, F Martin Maroto, AFR Hühmer
Analytical chemistry 78 (24), 8207-8217, 2006
113 2006 On the adiabatic to diabatic states transformation in the presence of a conical intersection: A most diabatic basis from the solution to a Poisson’s equation. I RG Sadygov, DR Yarkony
The Journal of chemical physics 109 (1), 20-25, 1998
113 1998 Assessment of cardiac proteome dynamics with heavy water: slower protein synthesis rates in interfibrillar than subsarcolemmal mitochondria T Kasumov, ER Dabkowski, KC Shekar, L Li, RF Ribeiro Jr, K Walsh, ...
American Journal of Physiology-Heart and Circulatory Physiology 304 (9 …, 2013
82 2013 Measuring protein synthesis using metabolic 2H labeling, high-resolution mass spectrometry, and an algorithm T Kasumov, S Ilchenko, L Li, N Rachdaoui, RG Sadygov, B Willard, ...
Analytical biochemistry 412 (1), 47-55, 2011
77 2011 Hepatic mitochondrial defects in a nonalcoholic fatty liver disease mouse model are associated with increased degradation of oxidative phosphorylation subunits K Lee, A Haddad, A Osme, C Kim, A Borzou, S Ilchenko, D Allende, ...
Molecular & Cellular Proteomics 17 (12), 2371-2386, 2018
73 2018 Cognitive enhancing treatment with a PPARγ agonist normalizes dentate granule cell presynaptic function in Tg2576 APP mice MN Nenov, F Laezza, SJ Haidacher, Y Zhao, RG Sadygov, JM Starkey, ...
Journal of Neuroscience 34 (3), 1028-1036, 2014
71 2014 Increased serotransferrin and ceruloplasmin turnover in diet-controlled patients with type 2 diabetes M Golizeh, K Lee, S Ilchenko, A Ösme, J Bena, RG Sadygov, SR Kashyap, ...
Free Radical Biology and Medicine 113, 461-469, 2017
63 2017 Altered Retinoic Acid Metabolism in Diabetic Mouse Kidney Identified by 18 O Isotopic Labeling and 2D Mass Spectrometry JM Starkey, Y Zhao, RG Sadygov, SJ Haidacher, WS LeJeune, N Dey, ...
PLoS One 5 (6), e11095, 2010
53 2010 d2ome, software for in vivo protein turnover analysis using heavy water labeling and LC–MS, reveals alterations of hepatic proteome dynamics in a mouse model of NAFLD RG Sadygov, J Avva, M Rahman, K Lee, S Ilchenko, T Kasumov, ...
Journal of proteome research 17 (11), 3740-3748, 2018
48 2018 Plasma proteome dynamics: analysis of lipoproteins and acute phase response proteins with 2H2O metabolic labeling L Li, B Willard, N Rachdaoui, JP Kirwan, RG Sadygov, WC Stanley, ...
Molecular & Cellular Proteomics 11 (7), M111. 014209-1-M111. 014209-16, 2012
48 2012 Unusual conical intersections in the Jahn–Teller effect: The electronically excited states of RG Sadygov, DR Yarkony
The Journal of chemical physics 110 (8), 3639-3642, 1999
46 1999