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Suzanne Sindi
Suzanne Sindi
Professor of Applied Mathematics
Verified email at ucmerced.edu - Homepage
Title
Cited by
Cited by
Year
A geometric approach for classification and comparison of structural variants
S Sindi, E Helman, A Bashir, BJ Raphael
Bioinformatics 25 (12), i222-i230, 2009
2072009
An integrative probabilistic model for identification of structural variation in sequencing data
SS Sindi, S Önal, LC Peng, HT Wu, BJ Raphael
Genome biology 13, 1-25, 2012
1762012
A size threshold limits prion transmission and establishes phenotypic diversity
A Derdowski, SS Sindi, CL Klaips, S DiSalvo, TR Serio
Science 330 (6004), 680-683, 2010
1212010
Characterization of structural variants with single molecule and hybrid sequencing approaches
A Ritz, A Bashir, S Sindi, D Hsu, I Hajirasouliha, BJ Raphael
Bioinformatics 30 (24), 3458-3466, 2014
1042014
A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow
KG Link, MT Stobb, J Di Paola, KB Neeves, AL Fogelson, SS Sindi, ...
PLoS One 13 (7), e0200917, 2018
702018
CD8 follicular T cells promote B cell antibody class switch in autoimmune disease
KM Valentine, D Davini, TJ Lawrence, GN Mullins, M Manansala, ...
The Journal of Immunology 201 (1), 31-40, 2018
682018
Identification of polymorphic inversions from genotypes
A Cáceres, SS Sindi, BJ Raphael, M Cáceres, JR González
BMC bioinformatics 13, 1-16, 2012
672012
Prion dynamics and the quest for the genetic determinant in protein-only inheritance
SS Sindi, TR Serio
Current opinion in microbiology 12 (6), 623-630, 2009
482009
Amyloid-associated activity contributes to the severity and toxicity of a prion phenotype
JA Pezza, J Villali, SS Sindi, TR Serio
Nature communications 5 (1), 4384, 2014
442014
To isolate or not to isolate: the impact of changing behavior on COVID-19 transmission
FB Agusto, IV Erovenko, A Fulk, Q Abu-Saymeh, D Romero-Alvarez, ...
BMC Public Health 22 (1), 138, 2022
432022
Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model
HT Banks, KB Flores, CR Langlois, TR Serio, SS Sindi
Inverse Problems in Science and Engineering 26 (2), 257-279, 2018
392018
Integrated platform for manual and high‐throughput statistical validation of tandem mass spectra
K Yu, A Sabelli, L DeKeukelaere, R Park, S Sindi, CA Gatsonis, ...
Proteomics 9 (11), 3115-3125, 2009
352009
Identification and frequency estimation of inversion polymorphisms from haplotype data
SS Sindi, BJ Raphael
Journal of computational biology 17 (3), 517-531, 2010
332010
How and why to build a mathematical model: A case study using prion aggregation
M Banwarth-Kuhn, S Sindi
Journal of Biological Chemistry 295 (15), 5022-5035, 2020
322020
Nucleation seed size determines amyloid clearance and establishes a barrier to prion appearance in yeast
J Villali, J Dark, TM Brechtel, F Pei, SS Sindi, TR Serio
Nature structural & molecular biology 27 (6), 540-549, 2020
292020
Culturomics as a data playground for tests of selection: Mathematical approaches to detecting selection in word use
SS Sindi, R Dale
Journal of theoretical biology 405, 140-149, 2016
262016
A mathematical model of coagulation under flow identifies factor V as a modifier of thrombin generation in hemophilia A
KG Link, MT Stobb, MG Sorrells, M Bortot, K Ruegg, MJ Manco‐Johnson, ...
Journal of Thrombosis and Haemostasis 18 (2), 306-317, 2020
242020
A mathematical model of the dynamics of prion aggregates with chaperone-mediated fragmentation
JK Davis, SS Sindi
Journal of mathematical biology 72 (6), 1555-1578, 2016
222016
Duplication count distributions in DNA sequences
SS Sindi, BR Hunt, JA Yorke
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 78 (6 …, 2008
212008
ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders
AA Heydari, OA Davalos, L Zhao, KK Hoyer, SS Sindi
Bioinformatics 38 (8), 2194-2201, 2022
202022
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Articles 1–20