| A geometric approach for classification and comparison of structural variants S Sindi, E Helman, A Bashir, BJ Raphael Bioinformatics 25 (12), i222-i230, 2009 | 209 | 2009 |
| An integrative probabilistic model for identification of structural variation in sequencing data SS Sindi, S Önal, LC Peng, HT Wu, BJ Raphael Genome biology 13, 1-25, 2012 | 178 | 2012 |
| A size threshold limits prion transmission and establishes phenotypic diversity A Derdowski, SS Sindi, CL Klaips, S DiSalvo, TR Serio Science 330 (6004), 680-683, 2010 | 124 | 2010 |
| Characterization of structural variants with single molecule and hybrid sequencing approaches A Ritz, A Bashir, S Sindi, D Hsu, I Hajirasouliha, BJ Raphael Bioinformatics 30 (24), 3458-3466, 2014 | 108 | 2014 |
| A local and global sensitivity analysis of a mathematical model of coagulation and platelet deposition under flow KG Link, MT Stobb, J Di Paola, KB Neeves, AL Fogelson, SS Sindi, ... PLoS One 13 (7), e0200917, 2018 | 82 | 2018 |
| CD8 follicular T cells promote B cell antibody class switch in autoimmune disease KM Valentine, D Davini, TJ Lawrence, GN Mullins, M Manansala, ... The Journal of Immunology 201 (1), 31-40, 2018 | 75 | 2018 |
| Identification of polymorphic inversions from genotypes A Cáceres, SS Sindi, BJ Raphael, M Cáceres, JR González BMC bioinformatics 13, 1-16, 2012 | 68 | 2012 |
| To isolate or not to isolate: the impact of changing behavior on COVID-19 transmission FB Agusto, IV Erovenko, A Fulk, Q Abu-Saymeh, D Romero-Alvarez, ... BMC Public Health 22 (1), 138, 2022 | 51 | 2022 |
| Prion dynamics and the quest for the genetic determinant in protein-only inheritance SS Sindi, TR Serio Current opinion in microbiology 12 (6), 623-630, 2009 | 50 | 2009 |
| Amyloid-associated activity contributes to the severity and toxicity of a prion phenotype JA Pezza, J Villali, SS Sindi, TR Serio Nature communications 5 (1), 4384, 2014 | 47 | 2014 |
| Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model HT Banks, KB Flores, CR Langlois, TR Serio, SS Sindi Inverse Problems in Science and Engineering 26 (2), 257-279, 2018 | 41 | 2018 |
| How and why to build a mathematical model: A case study using prion aggregation M Banwarth-Kuhn, S Sindi Journal of Biological Chemistry 295 (15), 5022-5035, 2020 | 38 | 2020 |
| Integrated platform for manual and high‐throughput statistical validation of tandem mass spectra K Yu, A Sabelli, L DeKeukelaere, R Park, S Sindi, CA Gatsonis, ... Proteomics 9 (11), 3115-3125, 2009 | 35 | 2009 |
| Nucleation seed size determines amyloid clearance and establishes a barrier to prion appearance in yeast J Villali, J Dark, TM Brechtel, F Pei, SS Sindi, TR Serio Nature structural & molecular biology 27 (6), 540-549, 2020 | 33 | 2020 |
| Identification and frequency estimation of inversion polymorphisms from haplotype data SS Sindi, BJ Raphael Journal of computational biology 17 (3), 517-531, 2010 | 33 | 2010 |
| A mathematical model of coagulation under flow identifies factor V as a modifier of thrombin generation in hemophilia A KG Link, MT Stobb, MG Sorrells, M Bortot, K Ruegg, MJ Manco‐Johnson, ... Journal of Thrombosis and Haemostasis 18 (2), 306-317, 2020 | 30 | 2020 |
| Culturomics as a data playground for tests of selection: Mathematical approaches to detecting selection in word use SS Sindi, R Dale Journal of theoretical biology 405, 140-149, 2016 | 26 | 2016 |
| ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders AA Heydari, OA Davalos, L Zhao, KK Hoyer, SS Sindi Bioinformatics 38 (8), 2194-2201, 2022 | 24 | 2022 |
| A mathematical model of the dynamics of prion aggregates with chaperone-mediated fragmentation JK Davis, SS Sindi Journal of mathematical biology 72 (6), 1555-1578, 2016 | 24 | 2016 |
| Duplication count distributions in DNA sequences SS Sindi, BR Hunt, JA Yorke Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 78 (6 …, 2008 | 22 | 2008 |
