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Yuxing Liao
Yuxing Liao
Adresă de e-mail confirmată pe bcm.edu
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WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
Y Liao, J Wang, EJ Jaehnig, Z Shi, B Zhang
Nucleic acids research 47 (W1), W199-W205, 2019
24002019
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
4592020
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer Cell 39 (4), 509-528. e20, 2021
3902021
ECOD: an evolutionary classification of protein domains
H Cheng, RD Schaeffer, Y Liao, LN Kinch, J Pei, S Shi, BH Kim, ...
PLoS computational biology 10 (12), e1003926, 2014
3342014
Proteogenomic Characterization of Endometrial Carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
3242020
Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy
K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ...
Cell 183 (5), 1436-1456. e31, 2020
3112020
The WAVE regulatory complex links diverse receptors to the actin cytoskeleton
B Chen, K Brinkmann, Z Chen, CW Pak, Y Liao, S Shi, L Henry, ...
Cell 156 (1), 195-207, 2014
2832014
Proteogenomic characterization of pancreatic ductal adenocarcinoma
L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ...
Cell 184 (19), 5031-5052. e26, 2021
2712021
Large-scale determination of previously unsolved protein structures using evolutionary information
S Ovchinnikov, L Kinch, H Park, Y Liao, J Pei, DE Kim, H Kamisetty, ...
Elife 4, e09248, 2015
2712015
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma
C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ...
Cancer cell 39 (3), 361-379. e16, 2021
2172021
A proteogenomic portrait of lung squamous cell carcinoma
S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ...
Cell 184 (16), 4348-4371. e40, 2021
1902021
Deep learning in proteomics
B Wen, WF Zeng, Y Liao, Z Shi, SR Savage, W Jiang, B Zhang
Proteomics 20 (21-22), 1900335, 2020
1242020
CASP9 assessment of free modeling target predictions
L Kinch, S Yong Shi, Q Cong, H Cheng, Y Liao, NV Grishin
Proteins: Structure, Function, and Bioinformatics 79 (S10), 59-73, 2011
1212011
ECOD: new developments in the evolutionary classification of domains
RD Schaeffer, Y Liao, H Cheng, NV Grishin
Nucleic acids research 45 (D1), D296-D302, 2017
752017
Manual classification strategies in the ECOD database
H Cheng, Y Liao, RD Schaeffer, NV Grishin
Proteins: Structure, Function, and Bioinformatics 83 (7), 1238-1251, 2015
672015
Classification of proteins with shared motifs and internal repeats in the ECOD database
RD Schaeffer, LN Kinch, Y Liao, NV Grishin
Protein Science 25 (7), 1188-1203, 2016
242016
caAtlas: An immunopeptidome atlas of human cancer
X Yi, Y Liao, B Wen, K Li, Y Dou, SR Savage, B Zhang
IScience 24 (10), 2021
232021
Proteogenomic data and resources for pan-cancer analysis
Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan, F Aguet, Y Akiyama, ...
Cancer Cell 41 (8), 1397-1406, 2023
222023
Graph Algorithms for Condensing and Consolidating Gene Set Analysis Results
SR Savage, Z Shi, Y Liao, B Zhang
Molecular & Cellular Proteomics 18 (8), S141-S152, 2019
202019
Pan-cancer proteogenomics connects oncogenic drivers to functional states
Y Li, E Porta-Pardo, C Tokheim, MH Bailey, TM Yaron, V Stathias, ...
Cell 186 (18), 3921-3944. e25, 2023
182023
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