| Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology G Sturm, F Finotello, F Petitprez, JD Zhang, J Baumbach, WH Fridman, ... Bioinformatics 35 (14), i436-i445, 2019 | 443 | 2019 |
| Mass-spectrometry-based draft of the Arabidopsis proteome J Mergner, M Frejno, M List, M Papacek, X Chen, A Chaudhary, ... Nature 579 (7799), 409-414, 2020 | 249 | 2020 |
| Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing S Sadegh, J Matschinske, DB Blumenthal, G Galindez, T Kacprowski, ... Nature communications 11 (1), 3518, 2020 | 137 | 2020 |
| Arrhythmic gut microbiome signatures predict risk of type 2 diabetes S Reitmeier, S Kiessling, T Clavel, M List, EL Almeida, TS Ghosh, ... Cell host & microbe 28 (2), 258-272. e6, 2020 | 134 | 2020 |
| Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 114 | 2021 |
| Network pharmacology: curing causal mechanisms instead of treating symptoms C Nogales, ZM Mamdouh, M List, C Kiel, AI Casas, HHHW Schmidt Trends in Pharmacological Sciences 43 (2), 136-150, 2022 | 106 | 2022 |
| Immunedeconv: An R package for unified access to computational methods for estimating immune cell fractions from bulk RNA-sequencing data G Sturm, F Finotello, M List Bioinformatics for Cancer Immunotherapy, 223-232, 2020 | 78 | 2020 |
| SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype D Bongiovanni, M Klug, O Lazareva, S Weidlich, M Biasi, S Ursu, S Warth, ... Cell death & disease 12 (1), 50, 2021 | 76 | 2021 |
| Ten simple rules for developing usable software in computational biology M List, P Ebert, F Albrecht PLoS computational biology 13 (1), e1005265, 2017 | 74 | 2017 |
| Primer, pipelines, parameters: issues in 16S rRNA gene sequencing I Abellan-Schneyder, MS Matchado, S Reitmeier, A Sommer, Z Sewald, ... Msphere 6 (1), e01202-20, 2021 | 70 | 2021 |
| DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets F Albrecht, M List, C Bock, T Lengauer Nucleic acids research 44 (W1), W581-W586, 2016 | 69 | 2016 |
| Network analysis methods for studying microbial communities: A mini review MS Matchado, M Lauber, S Reitmeier, T Kacprowski, J Baumbach, ... Computational and structural biotechnology journal 19, 2687-2698, 2021 | 65 | 2021 |
| Classification of Breast Cancer Subtypes by combining Gene Expression and DNA Methylation Data M List, AC Hauschild, Q Tan, TA Kruse, J Mollenhauer, J Baumbach, ... Journal of Integrative Bioinformatics 11 (2), 236, 2014 | 65 | 2014 |
| The long non-coding RNA H19 suppresses carcinogenesis and chemoresistance in hepatocellular carcinoma CS Schultheiss, S Laggai, B Czepukojc, UK Hussein, M List, A Barghash, ... Cell Stress 1 (1), 37, 2017 | 55 | 2017 |
| KeyPathwayMinerWeb: online multi-omics network enrichment M List, N Alcaraz, M Dissing-Hansen, HJ Ditzel, J Mollenhauer, ... Nucleic Acids Research 44 (W1), W98-W104, 2016 | 52 | 2016 |
| De novo pathway-based biomarker identification N Alcaraz, M List, R Batra, F Vandin, HJ Ditzel, J Baumbach Nucleic acids research 45 (16), e151-e151, 2017 | 51 | 2017 |
| On the performance of de novo pathway enrichment R Batra, N Alcaraz, K Gitzhofer, J Pauling, HJ Ditzel, M Hellmuth, ... NPJ systems biology and applications 3 (1), 6, 2017 | 46 | 2017 |
| Large-scale inference of competing endogenous RNA networks with sparse partial correlation M List, A Dehghani Amirabad, D Kostka, MH Schulz Bioinformatics 35 (14), i596-i604, 2019 | 34 | 2019 |
| The AIMe registry for artificial intelligence in biomedical research J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ... Nature methods 18 (10), 1128-1131, 2021 | 28 | 2021 |
| Quantitative comparison of within-sample heterogeneity scores for DNA methylation data M Scherer, A Nebel, A Franke, J Walter, T Lengauer, C Bock, F Müller, ... Nucleic acids research 48 (8), e46-e46, 2020 | 27 | 2020 |
Jan BaumbachUniversity of HamburgVerified email at uni-hamburg.de
